Detailed information of Cxam_g1343.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: WP_170324964.1, IMP dehydrogenase [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families

 Sequence
Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9KH33Inosine-5'-monophosphate dehydrogenase OS=Rhizobium tropici OX=398 GN=guaB PE=3 SV=1
P44334Inosine-5'-monophosphate dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=guaB PE=3 SV=1
Q0WD32Inosine-5'-monophosphate dehydrogenase OS=Yersinia pestis OX=632 GN=guaB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001908 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00478
all species →		IMPDHIMP dehydrogenase / GMP reductase domainDomainInterproscan
PF00571
all species →		CBSCBS domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001093
all species →		DomainIMP dehydrogenase/GMP reductaseInterproscan
IPR005990
all species →		FamilyInosine-5'-monophosphate dehydrogenaseInterproscan
IPR013785
all species →		Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR046342
all species →		Homologous_superfamilyCBS domain superfamilyInterproscan
IPR000644
all species →		DomainCBS domainInterproscan
IPR015875
all species →		Conserved_siteIMP dehydrogenase / GMP reductase, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11911
all species →		INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0003938
all species →		Molecular FunctionIMP dehydrogenase activityInterproscan
GO:0006164
all species →		Biological Processpurine nucleotide biosynthetic processInterproscan
GO:0006183
all species →		Biological ProcessGTP biosynthetic processInterproscan
GO:0016491
all species →		Molecular Functionoxidoreductase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00088IMPDH, guaB; IMP dehydrogenaseEC:1.1.1.205
Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.sequence table not available–
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.sequence table not available–
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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