Genomic Location: not available for this species
NR annotation: MBN2491182.1, protein translocase subunit SecD [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| E4TJ18 | Protein translocase subunit SecD OS=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) OX=768670 GN=secD PE=3 SV=1 |
| D0MIN4 | Protein translocase subunit SecD OS=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) OX=518766 GN=secD PE=3 SV=1 |
| E6W4K8 | Protein translocase subunit SecD OS=Desulfurispirillum indicum (strain ATCC BAA-1389 / DSM 22839 / S5) OX=653733 GN=secD PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012723 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02355 all species → | SecD_SecF | Protein export membrane protein | Family | Interproscan |
| PF21760 all species → | SecD_1st | Protein translocase subunit SecDF, P1 domain, N-terminal | Domain | Interproscan |
| PF07549 all species → | Sec_GG | SecD/SecF GG Motif | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR048634 all species → | Domain | Protein export membrane protein SecD/SecF, C-terminal | Interproscan |
| IPR048631 all species → | Domain | Protein translocase subunit SecDF, P1 domain, N-terminal | Interproscan |
| IPR005665 all species → | Family | Protein-export membrane protein SecF, bacterial | Interproscan |
| IPR022645 all species → | Family | Protein-export membrane protein SecD/SecF, bacterial | Interproscan |
| IPR022813 all species → | Family | Protein-export membrane protein SecD/SecF, archaeal and bacterial | Interproscan |
| IPR022646 all species → | Conserved_site | Protein-export membrane protein SecD/SecF/SecDF, conserved site | Interproscan |
| IPR005791 all species → | Family | Protein translocase subunit SecD | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30081 all species → | PROTEIN-EXPORT MEMBRANE PROTEIN SEC | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0015450 all species → | Molecular Function | protein-transporting ATPase activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0015031 all species → | Biological Process | protein transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12257 | secDF; SecD/SecF fusion protein | - | Secretion system | ko02044 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
