Genomic Location: not available for this species
NR annotation: CAG4635413.1, EOG090X04TT [Artemia franciscana]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q5LSB0 | Ribosomal RNA large subunit methyltransferase E OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rlmE PE=3 SV=1 |
| Q1GHF1 | Ribosomal RNA large subunit methyltransferase E OS=Ruegeria sp. (strain TM1040) OX=292414 GN=rlmE PE=3 SV=1 |
| Q28QW4 | Ribosomal RNA large subunit methyltransferase E OS=Jannaschia sp. (strain CCS1) OX=290400 GN=rlmE PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007321 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02541 all species → | Ppx-GppA | Ppx/GppA phosphatase family | Family | Interproscan |
| PF01728 all species → | FtsJ | FtsJ-like methyltransferase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003695 all species → | Domain | Ppx/GppA phosphatase, N-terminal | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR002877 all species → | Domain | Ribosomal RNA methyltransferase, FtsJ domain | Interproscan |
| IPR043129 all species → | Homologous_superfamily | ATPase, nucleotide binding domain | Interproscan |
| IPR015507 all species → | Family | Ribosomal RNA large subunit methyltransferase E | Interproscan |
| IPR050273 all species → | Family | GppA/Ppx guanosine pentaphosphate hydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30005 all species → | EXOPOLYPHOSPHATASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0032259 all species → | Biological Process | methylation | Interproscan |
| GO:0001510 all species → | Biological Process | RNA methylation | Interproscan |
| GO:0016462 all species → | Molecular Function | pyrophosphatase activity | Interproscan |
Cxam_g1350.t1.Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
