Genomic Location: not available for this species
NR annotation: WP_109317280.1, sarcosine oxidase subunit alpha [Pseudovibrio ascidiaceicola]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| O87386 | Sarcosine oxidase subunit alpha OS=Rhizobium meliloti (strain 1021) OX=266834 GN=soxA PE=3 SV=2 |
| Q9AGP1 | Sarcosine oxidase subunit alpha OS=Arthrobacter sp. OX=1667 GN=soxA PE=1 SV=1 |
| Q46337 | Sarcosine oxidase subunit alpha OS=Corynebacterium sp. (strain P-1) OX=69006 GN=soxA PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0028170 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13510 all species → | Fer2_4 | 2Fe-2S iron-sulfur cluster binding domain | Domain | Interproscan |
| PF08669 all species → | GCV_T_C | Glycine cleavage T-protein C-terminal barrel domain | Domain | Interproscan |
| PF04268 all species → | SoxG | Sarcosine oxidase, gamma subunit family | Family | Interproscan |
| PF01571 all species → | GCV_T | Aminomethyltransferase folate-binding domain | Domain | Interproscan |
| PF07992 all species → | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | Domain | Interproscan |
| PF17806 all species → | SO_alpha_A3 | Sarcosine oxidase A3 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013977 all species → | Domain | Glycine cleavage T-protein, C-terminal barrel domain | Interproscan |
| IPR007375 all species → | Family | Sarcosine oxidase, gamma subunit | Interproscan |
| IPR006222 all species → | Domain | Aminomethyltransferase, folate-binding domain | Interproscan |
| IPR027266 all species → | Homologous_superfamily | GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1 | Interproscan |
| IPR028896 all species → | Family | Aminomethyltransferase-like | Interproscan |
| IPR006277 all species → | Family | Sarcosine oxidase, alpha subunit | Interproscan |
| IPR036188 all species → | Homologous_superfamily | FAD/NAD(P)-binding domain superfamily | Interproscan |
| IPR023753 all species → | Domain | FAD/NAD(P)-binding domain | Interproscan |
| IPR041854 all species → | Homologous_superfamily | BFD-like [2Fe-2S]-binding domain superfamily | Interproscan |
| IPR029043 all species → | Homologous_superfamily | Glycine cleavage T-protein/YgfZ, C-terminal | Interproscan |
| IPR042204 all species → | Homologous_superfamily | 2Fe-2S iron-sulfur cluster binding domain, N-terminal | Interproscan |
| IPR041117 all species → | Domain | SoxA, A3 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43757 all species → | AMINOMETHYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0008115 all species → | Molecular Function | sarcosine oxidase activity | Interproscan |
| GO:0046653 all species → | Biological Process | tetrahydrofolate metabolic process | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00302 | soxA; sarcosine oxidase, subunit alpha | EC:1.5.3.24 EC:1.5.3.1 | Glycine, serine and threonine metabolism | ko00260 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
