Genomic Location: not available for this species
NR annotation: WP_170335264.1, pyrroloquinoline quinone biosynthesis protein PqqE [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q5LTB4 | PqqA peptide cyclase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=pqqE PE=3 SV=1 |
| Q9EXU8 | PqqA peptide cyclase OS=Rhizobium meliloti (strain 1021) OX=266834 GN=pqqE PE=3 SV=1 |
| B8ENI9 | PqqA peptide cyclase OS=Methylocella silvestris (strain DSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2) OX=395965 GN=pqqE PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0050202 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13186 all species → | SPASM | Iron-sulfur cluster-binding domain | Domain | Interproscan |
| PF04055 all species → | Radical_SAM | Radical SAM superfamily | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013785 all species → | Homologous_superfamily | Aldolase-type TIM barrel | Interproscan |
| IPR050377 all species → | Family | Radical SAM superfamily enzymes | Interproscan |
| IPR006638 all species → | Domain | Elp3/MiaA/NifB-like, radical SAM core domain | Interproscan |
| IPR011843 all species → | Family | Coenzyme PQQ biosynthesis protein E, bacteria | Interproscan |
| IPR023885 all species → | Domain | 4Fe4S-binding SPASM domain | Interproscan |
| IPR007197 all species → | Domain | Radical SAM | Interproscan |
| IPR017200 all species → | Family | Coenzyme PQQ synthesis protein E-like | Interproscan |
| IPR000385 all species → | Conserved_site | MoaA/NifB/PqqE, iron-sulphur binding, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11228 all species → | RADICAL SAM DOMAIN PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0018189 all species → | Biological Process | pyrroloquinoline quinone biosynthetic process | Interproscan |
| GO:0051539 all species → | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06139 | pqqE; PqqA peptide cyclase | EC:1.21.98.4 | Enzymes with EC numbers | - | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
