Detailed information of Cxam_g14160.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: XP_047124039.1, transcription elongation factor SPT5 [Hydra vulgaris]
Species abbreviation CXAMA · all data for this species · gene families

 Sequence
Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZI08Transcription elongation factor SPT5 OS=Gallus gallus OX=9031 GN=SUPT5H PE=2 SV=1
O00267Transcription elongation factor SPT5 OS=Homo sapiens OX=9606 GN=SUPT5H PE=1 SV=1
O55201Transcription elongation factor SPT5 OS=Mus musculus OX=10090 GN=Supt5h PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005174 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03439
all species →		Spt5-NGNEarly transcription elongation factor of RNA pol II, NGN sectionFamilyInterproscan
PF11942
all species →		Spt5_NSpt5 transcription elongation factor, acidic N-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005100
all species →		DomainNGN domainInterproscan
IPR039659
all species →		FamilyTranscription elongation factor SPT5Interproscan
IPR041973
all species →		DomainSpt5, KOW domain repeat 1Interproscan
IPR039385
all species →		DomainNGN domain, eukaryoticInterproscan
IPR036735
all species →		Homologous_superfamilyNusG, N-terminal domain superfamilyInterproscan
IPR006645
all species →		DomainNusG-like, N-terminalInterproscan
IPR022581
all species →		DomainSpt5 transcription elongation factor, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11125
all species →		SUPPRESSOR OF TY 5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006368
all species →		Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0032044
all species →		Cellular ComponentDSIF complexInterproscan
GO:0032784
all species →		Biological Processregulation of DNA-templated transcription elongationInterproscan
GO:0006354
all species →		Biological ProcessDNA-templated transcription elongationInterproscan
GO:0140673
all species →		Biological Processtranscription elongation-coupled chromatin remodelingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Cxam_g14160.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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