Genomic Location: not available for this species
NR annotation: WP_269367580.1, Fic family protein [Sulfitobacter sp. G21635-S1]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P55548 | Probable protein adenylyltransferase y4lH OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a02670 PE=3 SV=1 |
| E6Z0R3 | Protein adenylyltransferase VbhT OS=Bartonella schoenbuchensis (strain DSM 13525 / NCTC 13165 / R1) OX=687861 GN=vbhT PE=1 SV=1 |
| P20605 | Probable protein adenylyltransferase Fic OS=Escherichia coli (strain K12) OX=83333 GN=fic PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02661 all species → | Fic | Fic/DOC family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036597 all species → | Homologous_superfamily | Fido-like domain superfamily | Interproscan |
| IPR003812 all species → | Domain | Fido domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR39560 all species → | PROTEIN ADENYLYLTRANSFERASE FIC-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0051302 all species → | Biological Process | regulation of cell division | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04095 | fic, FICD, HYPE; cell filamentation protein, protein adenylyltransferase | EC:2.7.7.108 | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
