Genomic Location: not available for this species
NR annotation: MCH7689310.1, NADH:ubiquinone reductase (Na(+)-transporting) subunit E [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| C5BII5 | Na(+)-translocating NADH-quinone reductase subunit E OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=nqrE PE=3 SV=1 |
| C6BWF6 | Na(+)-translocating NADH-quinone reductase subunit E OS=Maridesulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIMB 8403 / VKM B-1763) OX=526222 GN=nqrE PE=3 SV=1 |
| A4VMV0 | Na(+)-translocating NADH-quinone reductase subunit E OS=Stutzerimonas stutzeri (strain A1501) OX=379731 GN=nqrE PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02508 all species → | Rnf-Nqr | Rnf-Nqr subunit, membrane protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050133 all species → | Family | Ion-translocating oxidoreductase complex subunit A/E | Interproscan |
| IPR003667 all species → | Family | NqrDE/RnfAE | Interproscan |
| IPR010967 all species → | Family | Na(+)-translocating NADH-quinone reductase subunit E | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30335 all species → | INTEGRAL MEMBRANE PROTEIN OF SOXR-REDUCING COMPLEX | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0009276 all species → | Cellular Component | Gram-negative-bacterium-type cell wall | Interproscan |
| GO:0016655 all species → | Molecular Function | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | Interproscan |
| GO:0022904 all species → | Biological Process | respiratory electron transport chain | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00350 | nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E | EC:7.2.1.1 | Enzymes with EC numbers | - | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
