Genomic Location: not available for this species
NR annotation: XP_047144455.1, hemocyte protein-glutamine gamma-glutamyltransferase [Hydra vulgaris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P49221 | Protein-glutamine gamma-glutamyltransferase 4 OS=Homo sapiens OX=9606 GN=TGM4 PE=1 SV=2 |
| Q99041 | Protein-glutamine gamma-glutamyltransferase 4 OS=Rattus norvegicus OX=10116 GN=Tgm4 PE=1 SV=2 |
| A6QP57 | Protein-glutamine gamma-glutamyltransferase E OS=Bos taurus OX=9913 GN=TGM3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000880 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01477 all species → | PLAT | PLAT/LH2 domain | Domain | Interproscan |
| PF00868 all species → | Transglut_N | Transglutaminase family | Domain | Interproscan |
| PF00927 all species → | Transglut_C | Transglutaminase family, C-terminal ig like domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001024 all species → | Domain | PLAT/LH2 domain | Interproscan |
| IPR036985 all species → | Homologous_superfamily | Transglutaminase-like superfamily | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR036392 all species → | Homologous_superfamily | PLAT/LH2 domain superfamily | Interproscan |
| IPR036238 all species → | Homologous_superfamily | Transglutaminase, C-terminal domain superfamily | Interproscan |
| IPR050779 all species → | Family | Protein-glutamine gamma-glutamyltransferases | Interproscan |
| IPR023608 all species → | Family | Protein-glutamine gamma-glutamyltransferase, animal | Interproscan |
| IPR001102 all species → | Domain | Transglutaminase, N-terminal | Interproscan |
| IPR038765 all species → | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR008958 all species → | Domain | Transglutaminase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11590 all species → | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003810 all species → | Molecular Function | protein-glutamine gamma-glutamyltransferase activity | Interproscan |
| GO:0018149 all species → | Biological Process | peptide cross-linking | Interproscan |
| GO:0062023 all species → | Cellular Component | collagen-containing extracellular matrix | Interproscan |
Cxam_g16540.t1.Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
