Genomic Location: not available for this species
NR annotation: MBN2490549.1, glutamate--tRNA ligase [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| A0LSS7 | Glutamate--tRNA ligase OS=Acidothermus cellulolyticus (strain ATCC 43068 / DSM 8971 / 11B) OX=351607 GN=gltX PE=3 SV=1 |
| Q8RDZ8 | Glutamate--tRNA ligase OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=gltX PE=3 SV=2 |
| Q88LF6 | Glutamate--tRNA ligase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=gltX PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012038 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF19269 all species → | Anticodon_2 | Anticodon binding domain | Domain | Interproscan |
| PF00749 all species → | tRNA-synt_1c | tRNA synthetases class I (E and Q), catalytic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR033910 all species → | Domain | Glutamyl-tRNA synthetase | Interproscan |
| IPR020751 all species → | Homologous_superfamily | Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 | Interproscan |
| IPR045462 all species → | Domain | Aminoacyl-tRNA synthetase, class I, anticodon-binding | Interproscan |
| IPR004527 all species → | Family | Glutamate-tRNA ligase, bacterial/mitochondrial | Interproscan |
| IPR000924 all species → | Family | Glutamyl/glutaminyl-tRNA synthetase | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR001412 all species → | Conserved_site | Aminoacyl-tRNA synthetase, class I, conserved site | Interproscan |
| IPR020058 all species → | Domain | Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain | Interproscan |
| IPR008925 all species → | Homologous_superfamily | Aminoacyl-tRNA synthetase, class I, anticodon-binding superfamily | Interproscan |
| IPR049940 all species → | Family | Glutamyl-Q tRNA(Asp) synthetase/Glutamate--tRNA ligase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43311 all species → | GLUTAMATE--TRNA LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006424 all species → | Biological Process | glutamyl-tRNA aminoacylation | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004818 all species → | Molecular Function | glutamate-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0043039 all species → | Biological Process | tRNA aminoacylation | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| GO:0000049 all species → | Molecular Function | tRNA binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01885 | EARS, gltX; glutamyl-tRNA synthetase | EC:6.1.1.17 | Prokaryotic defense system | ko02048 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
