Genomic Location: not available for this species
NR annotation: XP_047132328.1, atlastin-2 [Hydra vulgaris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q8NHH9 | Atlastin-2 OS=Homo sapiens OX=9606 GN=ATL2 PE=1 SV=2 |
| Q95LN3 | Atlastin-2 OS=Macaca fascicularis OX=9541 GN=ATL2 PE=2 SV=1 |
| Q6PA06 | Atlastin-2 OS=Mus musculus OX=10090 GN=Atl2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004071 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02841 all species → | GBP_C | Guanylate-binding protein, C-terminal domain | Domain | Interproscan |
| PF02263 all species → | GBP | Guanylate-binding protein, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR036543 all species → | Homologous_superfamily | Guanylate-binding protein, C-terminal domain superfamily | Interproscan |
| IPR003191 all species → | Domain | Guanylate-binding protein/Atlastin, C-terminal | Interproscan |
| IPR015894 all species → | Domain | Guanylate-binding protein, N-terminal | Interproscan |
| IPR030386 all species → | Domain | GB1/RHD3-type guanine nucleotide-binding (G) domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10751 all species → | GUANYLATE BINDING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003924 all species → | Molecular Function | GTPase activity | Interproscan |
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| GO:0007029 all species → | Biological Process | endoplasmic reticulum organization | Interproscan |
| GO:0051260 all species → | Biological Process | protein homooligomerization | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17339 | ATL; atlastin | EC:3.6.5.- | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
