Genomic Location: not available for this species
NR annotation: XP_047124394.1, 1,4-alpha-glucan-branching enzyme [Hydra vulgaris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q04446 | 1,4-alpha-glucan-branching enzyme OS=Homo sapiens OX=9606 GN=GBE1 PE=1 SV=3 |
| Q6T308 | 1,4-alpha-glucan-branching enzyme OS=Felis catus OX=9685 GN=GBE1 PE=2 SV=1 |
| Q9D6Y9 | 1,4-alpha-glucan-branching enzyme OS=Mus musculus OX=10090 GN=Gbe1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003460 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02806 all species → | Alpha-amylase_C | Alpha amylase, C-terminal all-beta domain | Domain | Interproscan |
| PF02922 all species → | CBM_48 | Carbohydrate-binding module 48 (Isoamylase N-terminal domain) | Domain | Interproscan |
| PF00128 all species → | Alpha-amylase | Alpha amylase, catalytic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006048 all species → | Domain | Alpha-amylase/branching enzyme, C-terminal all beta | Interproscan |
| IPR037439 all species → | Family | 1,4-alpha-glucan-branching enzyme | Interproscan |
| IPR006047 all species → | Domain | Glycosyl hydrolase, family 13, catalytic domain | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR004193 all species → | Domain | Glycoside hydrolase, family 13, N-terminal | Interproscan |
| IPR013780 all species → | Homologous_superfamily | Glycosyl hydrolase, all-beta | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43651 all species → | 1,4-ALPHA-GLUCAN-BRANCHING ENZYME | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0043169 all species → | Molecular Function | cation binding | Interproscan |
| GO:0003844 all species → | Molecular Function | 1,4-alpha-glucan branching enzyme activity | Interproscan |
| GO:0005978 all species → | Biological Process | glycogen biosynthetic process | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0004553 all species → | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00700 | GBE1, glgB; 1,4-alpha-glucan branching enzyme | EC:2.4.1.18 | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
