Detailed information of Cxam_g2069.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: WP_176866621.1, 50S ribosomal protein L20 [Ruegeria haliotis]
Species abbreviation CXAMA · all data for this species · gene families

 Sequence
Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q16BG8Large ribosomal subunit protein bL20 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=rplT PE=3 SV=1
Q1GDM1Large ribosomal subunit protein bL20 OS=Ruegeria sp. (strain TM1040) OX=292414 GN=rplT PE=3 SV=1
Q5LMG5Large ribosomal subunit protein bL20 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rplT PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005439 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00453
all species →		Ribosomal_L20Ribosomal protein L20FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005813
all species →		FamilyLarge ribosomal subunit protein bL20Interproscan
IPR049946
all species →		Conserved_siteLarge ribosomal subunit protein bL20, conserved siteInterproscan
IPR035566
all species →		Homologous_superfamilyRibosomal protein bL20, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10986
all species →		39S RIBOSOMAL PROTEIN L20Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0019843
all species →		Molecular FunctionrRNA bindingInterproscan
GO:0000027
all species →		Biological Processribosomal large subunit assemblyInterproscan
GO:0022625
all species →		Cellular Componentcytosolic large ribosomal subunitInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02887RP-L20, MRPL20, rplT; large subunit ribosomal protein L20-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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