Genomic Location: not available for this species
NR annotation: MBN2492090.1, membrane protein insertase YidC [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q2LSF9 | Membrane protein insertase YidC OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=yidC PE=3 SV=1 |
| A0LLH3 | Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) OX=335543 GN=yidC PE=3 SV=1 |
| Q0K5C1 | Membrane protein insertase YidC OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=yidC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0019241 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02096 all species → | 60KD_IMP | 60Kd inner membrane protein | Family | Interproscan |
| PF14849 all species → | YidC_periplas | YidC periplasmic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001708 all species → | Family | Membrane insertase YidC/ALB3/OXA1/COX18 | Interproscan |
| IPR028053 all species → | Domain | Membrane insertase YidC, N-terminal | Interproscan |
| IPR028055 all species → | Domain | Membrane insertase YidC/Oxa/ALB, C-terminal | Interproscan |
| IPR047196 all species → | Domain | Membrane insertase YidC/ALB, C-terminal | Interproscan |
| IPR038221 all species → | Homologous_superfamily | YidC, periplasmic domain superfamily | Interproscan |
| IPR019998 all species → | Family | Membrane insertase YidC | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12428 all species → | OXA1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0032977 all species → | Molecular Function | membrane insertase activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0051205 all species → | Biological Process | protein insertion into membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03217 | yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase | - | Secretion system | ko02044 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
