Genomic Location: not available for this species
NR annotation: XP_020601194.1, uncharacterized protein LOC110040319 [Orbicella faveolata]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P9WQE2 | Phenolphthiocerol/phthiocerol polyketide synthase subunit C OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=ppsD PE=3 SV=1 |
| P9WQE3 | Phenolphthiocerol/phthiocerol polyketide synthase subunit D OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ppsD PE=1 SV=1 |
| Q7TXL7 | Phenolphthiocerol/phthiocerol polyketide synthase subunit C OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=ppsD PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000672 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08659 all species → | KR | KR domain | Family | Interproscan |
| PF00550 all species → | PP-binding | Phosphopantetheine attachment site | Domain | Interproscan |
| PF14765 all species → | PS-DH | Polyketide synthase dehydratase N-terminal domain | Domain | Interproscan |
| PF00109 all species → | ketoacyl-synt | Beta-ketoacyl synthase, N-terminal domain | Domain | Interproscan |
| PF02801 all species → | Ketoacyl-synt_C | Beta-ketoacyl synthase, C-terminal domain | Domain | Interproscan |
| PF00698 all species → | Acyl_transf_1 | Acyl transferase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013968 all species → | Domain | Polyketide synthase, ketoreductase domain | Interproscan |
| IPR018201 all species → | Active_site | Beta-ketoacyl synthase, active site | Interproscan |
| IPR001227 all species → | Homologous_superfamily | Acyl transferase domain superfamily | Interproscan |
| IPR036736 all species → | Homologous_superfamily | ACP-like superfamily | Interproscan |
| IPR009081 all species → | Domain | Phosphopantetheine binding ACP domain | Interproscan |
| IPR049551 all species → | Domain | Polyketide synthase, dehydratase domain, C-terminal | Interproscan |
| IPR042104 all species → | Homologous_superfamily | Polyketide synthase, dehydratase domain superfamily | Interproscan |
| IPR020841 all species → | Domain | Polyketide synthase, beta-ketoacyl synthase domain | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR014030 all species → | Domain | Beta-ketoacyl synthase, N-terminal | Interproscan |
| IPR049900 all species → | Domain | Polyketide/metazoan fatty acid synthase, dehydratase domain | Interproscan |
| IPR016036 all species → | Homologous_superfamily | Malonyl-CoA ACP transacylase, ACP-binding | Interproscan |
| IPR016035 all species → | Homologous_superfamily | Acyl transferase/acyl hydrolase/lysophospholipase | Interproscan |
| IPR050091 all species → | Family | Polyketide and Nonribosomal Peptide Biosynthesis Enzymes | Interproscan |
| IPR014031 all species → | Domain | Beta-ketoacyl synthase, C-terminal | Interproscan |
| IPR016039 all species → | Homologous_superfamily | Thiolase-like | Interproscan |
| IPR014043 all species → | Domain | Acyl transferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43775 all species → | FATTY ACID SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004315 all species → | Molecular Function | 3-oxoacyl-[acyl-carrier-protein] synthase activity | Interproscan |
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
| GO:0004312 all species → | Molecular Function | fatty acid synthase activity | Interproscan |
| GO:0016746 all species → | Molecular Function | acyltransferase activity | Interproscan |
Cxam_g22340.t1.Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
