Genomic Location: not available for this species
NR annotation: XP_020601112.1, cell cycle control protein 50A-like isoform X1 [Orbicella faveolata]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q5F362 | Cell cycle control protein 50A OS=Gallus gallus OX=9031 GN=TMEM30A PE=2 SV=1 |
| Q5R6C0 | Cell cycle control protein 50A OS=Pongo abelii OX=9601 GN=TMEM30A PE=2 SV=1 |
| Q9NV96 | Cell cycle control protein 50A OS=Homo sapiens OX=9606 GN=TMEM30A PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003094 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03381 all species → | CDC50 | LEM3 (ligand-effect modulator 3) family / CDC50 family | Family | Interproscan |
| PF10258 all species → | PHAX_RNA-bd | Phosphorylated adapter RNA export protein, RNA-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005045 all species → | Family | CDC50/LEM3 family | Interproscan |
| IPR038092 all species → | Homologous_superfamily | Phosphorylated adapter RNA export protein, RNA-binding domain superfamily | Interproscan |
| IPR019385 all species → | Domain | Phosphorylated adapter RNA export protein, RNA-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10926 all species → | CELL CYCLE CONTROL PROTEIN 50 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0005794 all species → | Cellular Component | Golgi apparatus | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
Cxam_g22464.t1.Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
