Genomic Location: not available for this species
NR annotation: WP_170404260.1, aspartate kinase [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| A4VJB4 | Aspartate kinase Ask_LysC OS=Stutzerimonas stutzeri (strain A1501) OX=379731 GN=lysC PE=1 SV=1 |
| Q88EI9 | Aspartate kinase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=PP_4473 PE=1 SV=1 |
| C3JXY0 | Aspartate kinase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=PFLU_4747 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0016547 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00696 all species → | AA_kinase | Amino acid kinase family | Family | Interproscan |
| PF01842 all species → | ACT | ACT domain | Domain | Interproscan |
| PF13840 all species → | ACT_7 | ACT domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002912 all species → | Domain | ACT domain | Interproscan |
| IPR001048 all species → | Domain | Aspartate/glutamate/uridylate kinase | Interproscan |
| IPR001341 all species → | Family | Aspartate kinase | Interproscan |
| IPR036393 all species → | Homologous_superfamily | Acetylglutamate kinase-like superfamily | Interproscan |
| IPR045865 all species → | Homologous_superfamily | ACT-like domain | Interproscan |
| IPR005260 all species → | Family | Aspartate kinase, monofunctional class | Interproscan |
| IPR041740 all species → | Domain | Aspartokinase catalytic domain | Interproscan |
| IPR027795 all species → | Domain | CASTOR, ACT domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21499 all species → | ASPARTATE KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004072 all species → | Molecular Function | aspartate kinase activity | Interproscan |
| GO:0008652 all species → | Biological Process | amino acid biosynthetic process | Interproscan |
| GO:0009089 all species → | Biological Process | lysine biosynthetic process via diaminopimelate | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0009090 all species → | Biological Process | homoserine biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00928 | lysC; aspartate kinase | EC:2.7.2.4 | Monobactam biosynthesis | ko00261 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
