Genomic Location: not available for this species
NR annotation: WP_170404263.1, phosphoenolpyruvate--protein phosphotransferase [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P37177 | Phosphoenolpyruvate-dependent phosphotransferase system OS=Escherichia coli (strain K12) OX=83333 GN=ptsP PE=1 SV=2 |
| P37178 | Phosphoenolpyruvate-dependent phosphotransferase system OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=ptsP PE=3 SV=2 |
| P08839 | Phosphoenolpyruvate-protein phosphotransferase OS=Escherichia coli (strain K12) OX=83333 GN=ptsI PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0015178 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00391 all species → | PEP-utilizers | PEP-utilising enzyme, mobile domain | Domain | Interproscan |
| PF02896 all species → | PEP-utilizers_C | PEP-utilising enzyme, PEP-binding domain | Domain | Interproscan |
| PF05524 all species → | PEP-utilisers_N | PEP-utilising enzyme, N-terminal | Family | Interproscan |
| PF13185 all species → | GAF_2 | GAF domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040442 all species → | Homologous_superfamily | Pyruvate kinase-like domain superfamily | Interproscan |
| IPR003018 all species → | Domain | GAF domain | Interproscan |
| IPR008279 all species → | Domain | PEP-utilising enzyme, mobile domain | Interproscan |
| IPR029016 all species → | Homologous_superfamily | GAF-like domain superfamily | Interproscan |
| IPR000121 all species → | Domain | PEP-utilising enzyme, C-terminal | Interproscan |
| IPR006318 all species → | Domain | Phosphotransferase system, enzyme I-like | Interproscan |
| IPR008731 all species → | Domain | Phosphotransferase system, enzyme I N-terminal | Interproscan |
| IPR050499 all species → | Family | Phosphoenolpyruvate-dependent sugar PTS enzyme | Interproscan |
| IPR036637 all species → | Homologous_superfamily | Phosphohistidine domain superfamily | Interproscan |
| IPR015813 all species → | Homologous_superfamily | Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily | Interproscan |
| IPR036618 all species → | Homologous_superfamily | PtsI, HPr-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46244 all species → | PHOSPHOENOLPYRUVATE-PROTEIN PHOSPHOTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0016310 all species → | Biological Process | phosphorylation | Interproscan |
| GO:0016772 all species → | Molecular Function | transferase activity, transferring phosphorus-containing groups | Interproscan |
| GO:0009401 all species → | Biological Process | phosphoenolpyruvate-dependent sugar phosphotransferase system | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08484 | ptsP; phosphotransferase system, enzyme I, PtsP | EC:2.7.3.9 | Transporters | ko02000 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
