Genomic Location: not available for this species
NR annotation: WP_170400138.1, precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P21921 | Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] OS=Sinorhizobium sp. OX=42445 GN=cobL PE=1 SV=1 |
| Q9HZU0 | Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=cobL PE=3 SV=1 |
| P9WGA9 | Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=cobL PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0050187 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00590 all species → | TP_methylase | Tetrapyrrole (Corrin/Porphyrin) Methylases | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014008 all species → | Family | Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit | Interproscan |
| IPR006365 all species → | Family | Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR000878 all species → | Domain | Tetrapyrrole methylase | Interproscan |
| IPR012818 all species → | Domain | Precorrin-6Y methyltransferase | Interproscan |
| IPR035996 all species → | Homologous_superfamily | Tetrapyrrole methylase superfamily | Interproscan |
| IPR050714 all species → | Family | Cobalamin biosynthesis methyltransferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43182 all species → | COBALT-PRECORRIN-6B C(15)-METHYLTRANSFERASE (DECARBOXYLATING) | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008276 all species → | Molecular Function | protein methyltransferase activity | Interproscan |
| GO:0009236 all species → | Biological Process | cobalamin biosynthetic process | Interproscan |
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00595 | cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase | EC:2.1.1.132 EC:2.1.1.289 EC:2.1.1.196 | Porphyrin metabolism | ko00860 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
