Genomic Location: not available for this species
NR annotation: WP_170328066.1, ABC transporter ATP-binding protein [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P31134 | Putrescine transport ATP-binding protein PotG OS=Escherichia coli (strain K12) OX=83333 GN=potG PE=1 SV=2 |
| Q47T99 | Spermidine/putrescine import ATP-binding protein PotA OS=Thermobifida fusca (strain YX) OX=269800 GN=potA PE=3 SV=1 |
| Q6MCV4 | Spermidine/putrescine import ATP-binding protein PotA OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=potA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006623 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00005 all species → | ABC_tran | ABC transporter | Domain | Interproscan |
| PF08402 all species → | TOBE_2 | TOBE domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR003439 all species → | Domain | ABC transporter-like, ATP-binding domain | Interproscan |
| IPR017871 all species → | Conserved_site | ABC transporter-like, conserved site | Interproscan |
| IPR005893 all species → | Family | Spermidine/putrescine import ATP-binding protein PotA-like | Interproscan |
| IPR050093 all species → | Family | ABC Transporter, Small Molecule Importer | Interproscan |
| IPR013611 all species → | Domain | Transport-associated OB, type 2 | Interproscan |
| IPR008995 all species → | Homologous_superfamily | Molybdate/tungstate binding, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42781 all species → | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0015417 all species → | Molecular Function | ABC-type polyamine transporter activity | Interproscan |
| GO:0015846 all species → | Biological Process | polyamine transport | Interproscan |
| GO:0043190 all species → | Cellular Component | ATP-binding cassette (ABC) transporter complex | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11076 | potG, spuF; putrescine transport system ATP-binding protein | EC:7.6.2.16 | Transporters | ko02000 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
