Genomic Location: not available for this species
NR annotation: KAJ8144926.1, hypothetical protein OY671_001987 [Metschnikowia pulcherrima]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P0CG99 | Ribonucleoside-diphosphate reductase subunit alpha 1 OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=nrdE1 PE=1 SV=1 |
| P0CH00 | Ribonucleoside-diphosphate reductase subunit alpha 2 OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=nrdE2 PE=1 SV=1 |
| P0A5W9 | Ribonucleoside-diphosphate reductase subunit alpha OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=nrdE PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003674 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02867 all species → | Ribonuc_red_lgC | Ribonucleotide reductase, barrel domain | Family | Interproscan |
| PF00268 all species → | Ribonuc_red_sm | Ribonucleotide reductase, small chain | Domain | Interproscan |
| PF00317 all species → | Ribonuc_red_lgN | Ribonucleotide reductase, all-alpha domain | Domain | Interproscan |
| PF08343 all species → | RNR_N | Ribonucleotide reductase N-terminal | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013346 all species → | Domain | Ribonucleotide reductase, class I, alpha subunit, C-terminal | Interproscan |
| IPR009078 all species → | Homologous_superfamily | Ferritin-like superfamily | Interproscan |
| IPR000788 all species → | Domain | Ribonucleotide reductase large subunit, C-terminal | Interproscan |
| IPR000358 all species → | Family | Ribonucleotide reductase small subunit family | Interproscan |
| IPR013509 all species → | Domain | Ribonucleotide reductase large subunit, N-terminal | Interproscan |
| IPR012348 all species → | Homologous_superfamily | Ribonucleotide reductase-like | Interproscan |
| IPR030475 all species → | Active_site | Ribonucleotide reductase small subunit, acitve site | Interproscan |
| IPR033909 all species → | Family | Ribonucleotide reductase small subunit | Interproscan |
| IPR013554 all species → | Domain | Ribonucleotide reductase N-terminal | Interproscan |
| IPR008926 all species → | Homologous_superfamily | Ribonucleotide reductase R1 subunit, N-terminal | Interproscan |
| IPR039718 all species → | Family | Ribonucleoside-diphosphate reductase large subunit | Interproscan |
| IPR026494 all species → | Family | Ribonucleoside-diphosphate reductase subunit beta | Interproscan |
| IPR026459 all species → | Family | Ribonucleotide reductase, class 1b, subunit NrdE | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11573 all species → | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009263 all species → | Biological Process | deoxyribonucleotide biosynthetic process | Interproscan |
| GO:0004748 all species → | Molecular Function | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0005971 all species → | Cellular Component | ribonucleoside-diphosphate reductase complex | Interproscan |
Cxam_g28472.t1.Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
