Detailed information of Cxam_g28879.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: XP_020911186.1, CREB-binding protein isoform X2 [Exaiptasia diaphana]
Species Cassiopea xamachana · all data for this species · gene families

 Sequence
Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B2RWS6Histone acetyltransferase p300 OS=Mus musculus OX=10090 GN=Ep300 PE=1 SV=2
Q09472Histone acetyltransferase p300 OS=Homo sapiens OX=9606 GN=EP300 PE=1 SV=2
P45481Histone lysine acetyltransferase CREBBP OS=Mus musculus OX=10090 GN=Crebbp PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001731 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02172
all species →		KIXKIX domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013178
all species →		FamilyHistone acetyltransferase Rtt109/CBPInterproscan
IPR003101
all species →		DomainCoactivator CBP, KIX domainInterproscan
IPR036529
all species →		Homologous_superfamilyCoactivator CBP, KIX domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13808
all species →		CBP/P300-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000123
all species →		Cellular Componenthistone acetyltransferase complexInterproscan
GO:0003713
all species →		Molecular Functiontranscription coactivator activityInterproscan
GO:0004402
all species →		Molecular Functionhistone acetyltransferase activityInterproscan
GO:0005667
all species →		Cellular Componenttranscription regulator complexInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0016573
all species →		Biological Processobsolete histone acetylationInterproscan
GO:0031490
all species →		Molecular Functionchromatin DNA bindingInterproscan
GO:0045944
all species →		Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0003712
all species →		Molecular Functiontranscription coregulator activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Cxam_g28879.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.sequence table not available–
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.sequence table not available–
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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