Genomic Location: not available for this species
NR annotation: MBN2490347.1, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| O33804 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase OS=Streptomyces toyocaensis OX=55952 GN=murF PE=3 SV=2 |
| P11880 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase OS=Escherichia coli (strain K12) OX=83333 GN=murF PE=1 SV=2 |
| Q2FWH4 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=murF PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0015600 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01225 all species → | Mur_ligase | Mur ligase family, catalytic domain | Domain | Interproscan |
| PF08245 all species → | Mur_ligase_M | Mur ligase middle domain | Domain | Interproscan |
| PF02875 all species → | Mur_ligase_C | Mur ligase family, glutamate ligase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005863 all species → | Family | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Interproscan |
| IPR036565 all species → | Homologous_superfamily | Mur-like, catalytic domain superfamily | Interproscan |
| IPR051046 all species → | Family | MurCDEF Family: Cell Wall and Coenzyme F430 Synthesis | Interproscan |
| IPR000713 all species → | Domain | Mur ligase, N-terminal catalytic domain | Interproscan |
| IPR036615 all species → | Homologous_superfamily | Mur ligase, C-terminal domain superfamily | Interproscan |
| IPR013221 all species → | Domain | Mur ligase, central | Interproscan |
| IPR035911 all species → | Homologous_superfamily | MurE/MurF, N-terminal | Interproscan |
| IPR004101 all species → | Domain | Mur ligase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43024 all species → | UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0047480 all species → | Molecular Function | UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity | Interproscan |
| GO:0071555 all species → | Biological Process | cell wall organization | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0016881 all species → | Molecular Function | acid-amino acid ligase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01929 | murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | EC:6.3.2.10 | Vancomycin resistance | ko01502 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
