Detailed information of Cxam_g30812.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: XP_047124731.1, unconventional myosin-IXa isoform X2 [Hydra vulgaris]
Species Cassiopea xamachana · all data for this species · gene families

 Sequence
Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8C170Unconventional myosin-IXa OS=Mus musculus OX=10090 GN=Myo9a PE=1 SV=2
Q9Z1N3Unconventional myosin-IXa OS=Rattus norvegicus OX=10116 GN=Myo9a PE=1 SV=1
B2RTY4Unconventional myosin-IXa OS=Homo sapiens OX=9606 GN=MYO9A PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001982 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00063
all species →		Myosin_headMyosin head (motor domain)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001609
all species →		DomainMyosin head, motor domainInterproscan
IPR046987
all species →		FamilyUnconventional class IX myosinInterproscan
IPR036961
all species →		Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46184
all species →		UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003774
all species →		Molecular Functioncytoskeletal motor activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0016459
all species →		Cellular Componentmyosin complexInterproscan
GO:0000146
all species →		Molecular Functionmicrofilament motor activityInterproscan
GO:0005096
all species →		Molecular FunctionGTPase activator activityInterproscan
GO:0005884
all species →		Cellular Componentactin filamentInterproscan
GO:0035556
all species →		Biological Processintracellular signal transductionInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Cxam_g30812.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.sequence table not available–
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.sequence table not available–
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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