Gene detail

Detailed information of Cxam_g30833.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: WCC58470.1, brachyury 1 [Gonothyraea loveni]
Species Cassiopea xamachana · all data for this species · gene families

Sequence

Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GL27	T-box transcription factor T OS=Canis lupus familiaris OX=9615 GN=TBXT PE=2 SV=1
O15178	T-box transcription factor T OS=Homo sapiens OX=9606 GN=TBXT PE=1 SV=1
P79777	T-box transcription factor T OS=Gallus gallus OX=9031 GN=TBXT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000326 (this species only) · gene tree & orthology
Transcription factor family	T-box · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907 all species →	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018186 all species →	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR001699 all species →	Family	T-box transcription factor	Interproscan
IPR036960 all species →	Homologous_superfamily	T-box superfamily	Interproscan
IPR046360 all species →	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267 all species →	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001707 all species →	Biological Process	mesoderm formation	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0003007 all species →	Biological Process	heart morphogenesis	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Cxam_g30833.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.