Genomic Location: not available for this species
NR annotation: WP_170326275.1, error-prone DNA polymerase [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q5LVN0 | Error-prone DNA polymerase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=dnaE2 PE=3 SV=1 |
| A6UDW8 | Error-prone DNA polymerase OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=dnaE2 PE=3 SV=1 |
| C3M9Z5 | Error-prone DNA polymerase OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=dnaE2 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011716 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17657 all species → | DNA_pol3_finger | Bacterial DNA polymerase III alpha subunit finger domain | Domain | Interproscan |
| PF14579 all species → | HHH_6 | Helix-hairpin-helix motif | Domain | Interproscan |
| PF07733 all species → | DNA_pol3_alpha | Bacterial DNA polymerase III alpha NTPase domain | Domain | Interproscan |
| PF02811 all species → | PHP | PHP domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040982 all species → | Domain | DNA polymerase III alpha subunit finger domain | Interproscan |
| IPR029460 all species → | Domain | DNA polymerase, helix-hairpin-helix motif | Interproscan |
| IPR011708 all species → | Domain | Bacterial DNA polymerase III, alpha subunit, NTPase domain | Interproscan |
| IPR004805 all species → | Family | Error-prone DNA polymerase/DNA polymerase III subunit alpha DnaE/PolC | Interproscan |
| IPR003141 all species → | Domain | Polymerase/histidinol phosphatase, N-terminal | Interproscan |
| IPR023073 all species → | Family | DNA polymerase, error-prone | Interproscan |
| IPR004013 all species → | Domain | PHP domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32294 all species → | DNA POLYMERASE III SUBUNIT ALPHA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0008408 all species → | Molecular Function | 3'-5' exonuclease activity | Interproscan |
| GO:0003887 all species → | Molecular Function | DNA-directed DNA polymerase activity | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14162 | dnaE2; error-prone DNA polymerase | EC:2.7.7.7 | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
