Genomic Location: not available for this species
NR annotation: WP_170401612.1, S41 family peptidase [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q44879 | Carboxy-terminal-processing protease OS=Bartonella bacilliformis (strain ATCC 35685 / KC583 / Herrer 020/F12,63) OX=360095 GN=ctpA PE=3 SV=1 |
| Q55669 | Carboxyl-terminal-processing protease OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=ctpA PE=3 SV=1 |
| Q4L6D0 | Probable CtpA-like serine protease OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=SH1486 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0015113 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13180 all species → | PDZ_2 | PDZ domain | Domain | Interproscan |
| PF03572 all species → | Peptidase_S41 | Peptidase family S41 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036034 all species → | Homologous_superfamily | PDZ superfamily | Interproscan |
| IPR001478 all species → | Domain | PDZ domain | Interproscan |
| IPR029045 all species → | Homologous_superfamily | ClpP/crotonase-like domain superfamily | Interproscan |
| IPR004447 all species → | Family | C-terminal-processing peptidase S41A | Interproscan |
| IPR005151 all species → | Domain | Tail specific protease | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32060 all species → | TAIL-SPECIFIC PROTEASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008236 all species → | Molecular Function | serine-type peptidase activity | Interproscan |
| GO:0004175 all species → | Molecular Function | endopeptidase activity | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0030288 all species → | Cellular Component | outer membrane-bounded periplasmic space | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03797 | E3.4.21.102, prc, ctpA; carboxyl-terminal processing protease | EC:3.4.21.102 | Peptidases and inhibitors | ko01002 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
