Genomic Location: not available for this species
NR annotation: WP_170326556.1, beta-galactosidase [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| O69315 | Beta-galactosidase OS=Thermus thermophilus OX=274 PE=1 SV=1 |
| Q8GEA9 | Beta-galactosidase BgaA OS=Thermus sp. OX=275 GN=bgaA PE=1 SV=1 |
| Q9X6C6 | Beta-galactosidase BgaT OS=Thermus brockianus OX=56956 GN=bgaT PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08532 all species → | Glyco_hydro_42M | Beta-galactosidase trimerisation domain | Domain | Interproscan |
| PF08533 all species → | Glyco_hydro_42C | Beta-galactosidase C-terminal domain | Domain | Interproscan |
| PF02449 all species → | Glyco_hydro_42 | Beta-galactosidase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR013780 all species → | Homologous_superfamily | Glycosyl hydrolase, all-beta | Interproscan |
| IPR029062 all species → | Homologous_superfamily | Class I glutamine amidotransferase-like | Interproscan |
| IPR013738 all species → | Domain | Beta-galactosidase trimerisation | Interproscan |
| IPR013739 all species → | Domain | Beta-galactosidase C-terminal | Interproscan |
| IPR003476 all species → | Family | Glycoside hydrolase, family 42 | Interproscan |
| IPR013529 all species → | Domain | Glycoside hydrolase, family 42, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR36447 all species → | BETA-GALACTOSIDASE GANA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004565 all species → | Molecular Function | beta-galactosidase activity | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0006012 all species → | Biological Process | galactose metabolic process | Interproscan |
| GO:0009341 all species → | Cellular Component | beta-galactosidase complex | Interproscan |
Cxam_g3511.t1.Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
