Genomic Location: not available for this species
NR annotation: MBN2490460.1, chaperonin GroEL [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| C1A8L8 | Chaperonin GroEL OS=Gemmatimonas aurantiaca (strain DSM 14586 / JCM 11422 / NBRC 100505 / T-27) OX=379066 GN=groEL PE=3 SV=1 |
| Q2IFK0 | Chaperonin GroEL 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) OX=290397 GN=groEL2 PE=3 SV=1 |
| A7HGP8 | Chaperonin GroEL 2 OS=Anaeromyxobacter sp. (strain Fw109-5) OX=404589 GN=groEL2 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006322 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00118 all species → | Cpn60_TCP1 | TCP-1/cpn60 chaperonin family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001844 all species → | Family | Chaperonin Cpn60/GroEL | Interproscan |
| IPR027413 all species → | Homologous_superfamily | GroEL-like equatorial domain superfamily | Interproscan |
| IPR027409 all species → | Homologous_superfamily | GroEL-like apical domain superfamily | Interproscan |
| IPR027410 all species → | Homologous_superfamily | TCP-1-like chaperonin intermediate domain superfamily | Interproscan |
| IPR002423 all species → | Family | Chaperonin Cpn60/GroEL/TCP-1 family | Interproscan |
| IPR018370 all species → | Conserved_site | Chaperonin Cpn60, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45633 all species → | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006457 all species → | Biological Process | protein folding | Interproscan |
| GO:0009408 all species → | Biological Process | response to heat | Interproscan |
| GO:0042026 all species → | Biological Process | protein refolding | Interproscan |
| GO:0051082 all species → | Molecular Function | unfolded protein binding | Interproscan |
| GO:0051085 all species → | Biological Process | chaperone cofactor-dependent protein refolding | Interproscan |
| GO:0140662 all species → | Molecular Function | ATP-dependent protein folding chaperone | Interproscan |
| GO:1990220 all species → | Cellular Component | GroEL-GroES complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04077 | groEL, HSPD1; chaperonin GroEL | EC:5.6.1.7 | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
