Genomic Location: not available for this species
NR annotation: WP_170333342.1, 2-oxoglutarate dehydrogenase E1 component [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| A9M8Q9 | 2-oxoglutarate dehydrogenase E1 component OS=Brucella canis (strain ATCC 23365 / NCTC 10854 / RM-666) OX=483179 GN=sucA PE=3 SV=1 |
| A6WXF0 | 2-oxoglutarate dehydrogenase E1 component OS=Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37) OX=439375 GN=sucA PE=3 SV=1 |
| Q8FYF7 | 2-oxoglutarate dehydrogenase E1 component OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=sucA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001267 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00676 all species → | E1_dh | Dehydrogenase E1 component | Family | Interproscan |
| PF02779 all species → | Transket_pyr | Transketolase, pyrimidine binding domain | Domain | Interproscan |
| PF16870 all species → | OxoGdeHyase_C | 2-oxoglutarate dehydrogenase C-terminal | Family | Interproscan |
| PF16078 all species → | 2-oxogl_dehyd_N | 2-oxoglutarate dehydrogenase N-terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005475 all species → | Domain | Transketolase-like, pyrimidine-binding domain | Interproscan |
| IPR011603 all species → | Family | 2-oxoglutarate dehydrogenase E1 component | Interproscan |
| IPR001017 all species → | Domain | Dehydrogenase, E1 component | Interproscan |
| IPR029061 all species → | Homologous_superfamily | Thiamin diphosphate-binding fold | Interproscan |
| IPR031717 all species → | Domain | Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal | Interproscan |
| IPR032106 all species → | Domain | 2-oxoglutarate dehydrogenase E1 component, N-terminal domain | Interproscan |
| IPR042179 all species → | Homologous_superfamily | Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23152 all species → | 2-OXOGLUTARATE DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004591 all species → | Molecular Function | oxoglutarate dehydrogenase (succinyl-transferring) activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006099 all species → | Biological Process | tricarboxylic acid cycle | Interproscan |
| GO:0016624 all species → | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | Interproscan |
| GO:0030976 all species → | Molecular Function | thiamine pyrophosphate binding | Interproscan |
| GO:0045252 all species → | Cellular Component | oxoglutarate dehydrogenase complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00164 | OGDH, sucA; 2-oxoglutarate dehydrogenase E1 component | EC:1.2.4.2 | Lipoic acid metabolism | ko00785 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
