Genomic Location: not available for this species
NR annotation: WP_170402809.1, transcription elongation factor GreA [Ruegeria arenilitoris]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q5LXA4 | Transcription elongation factor GreA OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=greA PE=3 SV=1 |
| A4WVE8 | Transcription elongation factor GreA OS=Cereibacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) OX=349102 GN=greA PE=3 SV=1 |
| Q28V47 | Transcription elongation factor GreA OS=Jannaschia sp. (strain CCS1) OX=290400 GN=greA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013113 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03449 all species → | GreA_GreB_N | Transcription elongation factor, N-terminal | Domain | Interproscan |
| PF01272 all species → | GreA_GreB | Transcription elongation factor, GreA/GreB, C-term | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022691 all species → | Domain | Transcription elongation factor, GreA/GreB, N-terminal | Interproscan |
| IPR023459 all species → | Family | Transcription elongation factor GreA/GreB family | Interproscan |
| IPR028624 all species → | Family | Transcription elongation factor GreA/GreB | Interproscan |
| IPR018151 all species → | Conserved_site | Transcription elongation factor, GreA/GreB, conserved site | Interproscan |
| IPR006359 all species → | Family | Transcription elongation factor GreA | Interproscan |
| IPR036805 all species → | Homologous_superfamily | Transcription elongation factor, GreA/GreB, N-terminal domain superfamily | Interproscan |
| IPR036953 all species → | Homologous_superfamily | Transcription elongation factor GreA/GreB, C-terminal domain superfamily | Interproscan |
| IPR001437 all species → | Domain | Transcription elongation factor, GreA/GreB, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30437 all species → | TRANSCRIPTION ELONGATION FACTOR GREA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0032784 all species → | Biological Process | regulation of DNA-templated transcription elongation | Interproscan |
| GO:0070063 all species → | Molecular Function | RNA polymerase binding | Interproscan |
| GO:0006354 all species → | Biological Process | DNA-templated transcription elongation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03624 | greA; transcription elongation factor GreA | - | Transcription machinery | ko03021 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
