Detailed information of Cxam_g4402.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: CAB3998474.1, probable ATP-dependent RNA helicase DDX56 [Paramuricea clavata]
Species abbreviation CXAMA · all data for this species · gene families

 Sequence
Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9NY93Probable ATP-dependent RNA helicase DDX56 OS=Homo sapiens OX=9606 GN=DDX56 PE=1 SV=1
Q3SZ40Probable ATP-dependent RNA helicase DDX56 OS=Bos taurus OX=9913 GN=DDX56 PE=2 SV=1
Q9D0R4Probable ATP-dependent RNA helicase DDX56 OS=Mus musculus OX=10090 GN=Ddx56 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005932 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00270
all species →		DEADDEAD/DEAH box helicaseDomainInterproscan
PF21245
all species →		PI4KB-PIK1_PIKPI4KB/PIK1, accessory (PIK) domainRepeatInterproscan
PF00271
all species →		Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650
all species →		DomainHelicase, C-terminal domain-likeInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR011545
all species →		DomainDEAD/DEAH box helicase domainInterproscan
IPR014001
all species →		DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR049160
all species →		DomainPI4KB/PIK1, accessory domainInterproscan
IPR001263
all species →		DomainPhosphoinositide 3-kinase, accessory (PIK) domainInterproscan
IPR050079
all species →		FamilyDEAD box RNA helicaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47959
all species →		ATP-DEPENDENT RNA HELICASE RHLE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Cxam_g4402.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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