Genomic Location: not available for this species
NR annotation: GJM44328.1, succinate dehydrogenase flavoprotein subunit [Gemmatimonadota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| D9PU00 | Fumarate reductase (CoM/CoB) subunit A OS=Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) OX=79929 GN=tfrA PE=1 SV=1 |
| Q60356 | Uncharacterized FAD-dependent oxidoreductase MJ0033 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0033 PE=3 SV=1 |
| P0AC43 | Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O157:H7 OX=83334 GN=sdhA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003918 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02910 all species → | Succ_DH_flav_C | Fumarate reductase flavoprotein C-term | Domain | Interproscan |
| PF00890 all species → | FAD_binding_2 | FAD binding domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037099 all species → | Homologous_superfamily | Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily | Interproscan |
| IPR030664 all species → | Family | FAD-dependent oxidoreductase SdhA/FrdA/AprA | Interproscan |
| IPR027477 all species → | Homologous_superfamily | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily | Interproscan |
| IPR036188 all species → | Homologous_superfamily | FAD/NAD(P)-binding domain superfamily | Interproscan |
| IPR015939 all species → | Domain | Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal | Interproscan |
| IPR003953 all species → | Domain | FAD-dependent oxidoreductase 2, FAD binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11632 all species → | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0000104 all species → | Molecular Function | succinate dehydrogenase activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0009055 all species → | Molecular Function | electron transfer activity | Interproscan |
| GO:0009061 all species → | Biological Process | anaerobic respiration | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00239 | sdhA, frdA; succinate dehydrogenase flavoprotein subunit | EC:1.3.5.1 | Legionellosis | ko05134 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
