Genomic Location: not available for this species
NR annotation: WP_170516660.1, 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase [Ruegeria atlantica]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P42269 | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase OS=Escherichia coli OX=562 GN=hpcC PE=1 SV=1 |
| P19059 | 2-hydroxymuconic semialdehyde dehydrogenase OS=Pseudomonas sp. (strain CF600) OX=79676 GN=dmpC PE=3 SV=1 |
| Q9KWS5 | 2-aminomuconic 6-semialdehyde dehydrogenase OS=Pseudomonas sp. OX=306 GN=amnC PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000413 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02962 all species → | CHMI | 5-carboxymethyl-2-hydroxymuconate isomerase | Domain | Interproscan |
| PF00171 all species → | Aldedh | Aldehyde dehydrogenase family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004220 all species → | Family | 5-carboxymethyl-2-hydroxymuconate isomerase | Interproscan |
| IPR016163 all species → | Homologous_superfamily | Aldehyde dehydrogenase, C-terminal | Interproscan |
| IPR011985 all species → | Family | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase | Interproscan |
| IPR016162 all species → | Homologous_superfamily | Aldehyde dehydrogenase, N-terminal | Interproscan |
| IPR029510 all species → | Conserved_site | Aldehyde dehydrogenase, glutamic acid active site | Interproscan |
| IPR014347 all species → | Homologous_superfamily | Tautomerase/MIF superfamily | Interproscan |
| IPR015590 all species → | Domain | Aldehyde dehydrogenase domain | Interproscan |
| IPR016161 all species → | Homologous_superfamily | Aldehyde/histidinol dehydrogenase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43720 all species → | 2-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008704 all species → | Molecular Function | 5-carboxymethyl-2-hydroxymuconate delta-isomerase activity | Interproscan |
| GO:0019439 all species → | Biological Process | obsolete aromatic compound catabolic process | Interproscan |
| GO:0016620 all species → | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0018480 all species → | Molecular Function | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity | Interproscan |
| GO:1901023 all species → | Biological Process | 4-hydroxyphenylacetate catabolic process | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00151 | hpaE, hpcC; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | EC:1.2.1.60 | Tyrosine metabolism | ko00350 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
