Genomic Location: not available for this species
NR annotation: MBN2492753.1, tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q2SDV0 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=queA PE=3 SV=1 |
| B5EK09 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993 / BNL-5-31) OX=380394 GN=queA PE=3 SV=1 |
| Q7NZD4 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK) OX=243365 GN=queA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0026307 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02547 all species → | Queuosine_synth | Queuosine biosynthesis protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR042119 all species → | Homologous_superfamily | QueA, domain 2 | Interproscan |
| IPR003699 all species → | Family | S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA | Interproscan |
| IPR042118 all species → | Homologous_superfamily | QueA, domain 1 | Interproscan |
| IPR036100 all species → | Homologous_superfamily | S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30307 all species → | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0002099 all species → | Biological Process | tRNA wobble guanine modification | Interproscan |
| GO:0008616 all species → | Biological Process | queuosine biosynthetic process | Interproscan |
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
| GO:0016853 all species → | Molecular Function | isomerase activity | Interproscan |
| GO:0051075 all species → | Molecular Function | S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07568 | queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase | EC:2.4.99.17 | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
