Detailed information of Cxam_g5387.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: MBN2490613.1, sigma 54-interacting transcriptional regulator [Planctomycetota bacterium]
Species abbreviation CXAMA · all data for this species · gene families

 Sequence
Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P06519Transcriptional regulatory protein XylR OS=Pseudomonas putida OX=303 GN=xylR PE=4 SV=1
P14375Transcriptional regulatory protein ZraR OS=Escherichia coli (strain K12) OX=83333 GN=zraR PE=1 SV=2
Q8Z333Transcriptional regulatory protein ZraR OS=Salmonella typhi OX=90370 GN=zraR PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0040720 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02954
all species →		HTH_8Bacterial regulatory protein, Fis familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002078
all species →		DomainRNA polymerase sigma factor 54 interaction domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR025944
all species →		Conserved_siteSigma-54 interaction domain, conserved siteInterproscan
IPR002197
all species →		DomainDNA binding HTH domain, Fis-typeInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR32071
all species →		TRANSCRIPTIONAL REGULATORY PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008134
all species →		Molecular Functiontranscription factor bindingInterproscan
GO:0043565
all species →		Molecular Functionsequence-specific DNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Cxam_g5387.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP