Genomic Location: not available for this species
NR annotation: WP_052265358.1, TonB-dependent receptor [Ruegeria sp. ANG-R]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| A5VW32 | Heme transporter BhuA OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) OX=444178 GN=bhuA PE=3 SV=2 |
| Q8FUN0 | Heme transporter BhuA OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=bhuA PE=3 SV=1 |
| Q576D7 | Heme transporter BhuA OS=Brucella abortus biovar 1 (strain 9-941) OX=262698 GN=bhuA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0049163 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00593 all species → | TonB_dep_Rec | TonB dependent receptor | Family | Interproscan |
| PF07715 all species → | Plug | TonB-dependent Receptor Plug Domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036942 all species → | Homologous_superfamily | TonB-dependent receptor-like, beta-barrel domain superfamily | Interproscan |
| IPR037066 all species → | Homologous_superfamily | TonB-dependent receptor, plug domain superfamily | Interproscan |
| IPR000531 all species → | Domain | TonB-dependent receptor-like, beta-barrel | Interproscan |
| IPR039426 all species → | Family | TonB-dependent receptor-like | Interproscan |
| IPR012910 all species → | Domain | TonB-dependent receptor, plug domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30069 all species → | TONB-DEPENDENT OUTER MEMBRANE RECEPTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015344 all species → | Molecular Function | siderophore uptake transmembrane transporter activity | Interproscan |
| GO:0031230 all species → | Cellular Component | obsolete intrinsic component of cell outer membrane | Interproscan |
| GO:0044718 all species → | Biological Process | siderophore transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16087 | TC.FEV.OM3, tbpA, hemR, lbpA, hpuB, bhuR, hugA, hmbR; hemoglobin/transferrin/lactoferrin receptor protein | - | Transporters | ko02000 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
