Genomic Location: not available for this species
NR annotation: GER90195.1, hypothetical protein KDW_43570 [Dictyobacter vulcani]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q70LM5 | Linear gramicidin synthase subunit C OS=Brevibacillus parabrevis OX=54914 GN=lgrC PE=3 SV=1 |
| Q70LM6 | Linear gramicidin synthase subunit B OS=Brevibacillus parabrevis OX=54914 GN=lgrB PE=1 SV=1 |
| Q70LM4 | Linear gramicidin synthase subunit D OS=Brevibacillus parabrevis OX=54914 GN=lgrD PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002095 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00550 all species → | PP-binding | Phosphopantetheine attachment site | Domain | Interproscan |
| PF00668 all species → | Condensation | Condensation domain | Family | Interproscan |
| PF00501 all species → | AMP-binding | AMP-binding enzyme | Family | Interproscan |
| PF13193 all species → | AMP-binding_C | AMP-binding enzyme C-terminal domain | Domain | Interproscan |
| PF13649 all species → | Methyltransf_25 | Methyltransferase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036736 all species → | Homologous_superfamily | ACP-like superfamily | Interproscan |
| IPR020845 all species → | Conserved_site | AMP-binding, conserved site | Interproscan |
| IPR045851 all species → | Homologous_superfamily | AMP-binding enzyme, C-terminal domain superfamily | Interproscan |
| IPR006162 all species → | PTM | Phosphopantetheine attachment site | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR023213 all species → | Homologous_superfamily | Chloramphenicol acetyltransferase-like domain superfamily | Interproscan |
| IPR009081 all species → | Domain | Phosphopantetheine binding ACP domain | Interproscan |
| IPR010060 all species → | Domain | Non-ribosomal peptide synthase | Interproscan |
| IPR001242 all species → | Domain | Condensation domain | Interproscan |
| IPR000873 all species → | Domain | AMP-dependent synthetase/ligase domain | Interproscan |
| IPR042099 all species → | Homologous_superfamily | ANL, N-terminal domain | Interproscan |
| IPR025110 all species → | Domain | AMP-binding enzyme, C-terminal domain | Interproscan |
| IPR041698 all species → | Domain | Methyltransferase domain 25 | Interproscan |
| IPR010071 all species → | Domain | Amino acid adenylation domain | Interproscan |
| IPR020806 all species → | Domain | Polyketide synthase, phosphopantetheine-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45527 all species → | NONRIBOSOMAL PEPTIDE SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0031177 all species → | Molecular Function | phosphopantetheine binding | Interproscan |
| GO:0043041 all species → | Biological Process | amino acid activation for nonribosomal peptide biosynthetic process | Interproscan |
| GO:0044550 all species → | Biological Process | secondary metabolite biosynthetic process | Interproscan |
Cxam_g6241.t1.Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
