Gene detail

Detailed information of Cxam_g862.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: SMO49291.1, carbohydrate ABC transporter substrate-binding protein, CUT1 family [Ruegeria faecimaris]
Species Cassiopea xamachana · all data for this species · gene families

Sequence

Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0032252 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01547 all species →	SBP_bac_1	Bacterial extracellular solute-binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006059 all species →	Family	Bacterial-type extracellular solute-binding protein	Interproscan
IPR006311 all species →	Conserved_site	Twin-arginine translocation pathway, signal sequence	Interproscan
IPR050490 all species →	Family	Bacterial solute-binding protein 1	Interproscan
IPR014597 all species →	Family	ABC transporter, periplasmic substrate-binding protein, predicted	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43649 all species →	ARABINOSE-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17321	glpV; glycerol transport system substrate-binding protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.