Genomic Location: not available for this species
NR annotation: TAJ08816.1, methionine synthase [Nitrospirota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q7MHB1 | Methionine synthase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=metH PE=3 SV=1 |
| Q87L95 | Methionine synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=metH PE=3 SV=1 |
| Q8DCJ7 | Methionine synthase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=metH PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002666 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02607 all species → | B12-binding_2 | B12 binding domain | Domain | Interproscan |
| PF02310 all species → | B12-binding | B12 binding domain | Domain | Interproscan |
| PF02574 all species → | S-methyl_trans | Homocysteine S-methyltransferase | Family | Interproscan |
| PF00809 all species → | Pterin_bind | Pterin binding enzyme | Domain | Interproscan |
| PF02965 all species → | Met_synt_B12 | Vitamin B12 dependent methionine synthase, activation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011822 all species → | Family | Cobalamin-dependent methionine synthase | Interproscan |
| IPR003759 all species → | Domain | Cobalamin (vitamin B12)-binding module, cap domain | Interproscan |
| IPR036594 all species → | Homologous_superfamily | Methionine synthase domain | Interproscan |
| IPR000489 all species → | Domain | Pterin-binding domain | Interproscan |
| IPR011005 all species → | Homologous_superfamily | Dihydropteroate synthase-like superfamily | Interproscan |
| IPR006158 all species → | Domain | Cobalamin (vitamin B12)-binding domain | Interproscan |
| IPR037010 all species → | Homologous_superfamily | Vitamin B12-dependent methionine synthase, activation domain superfamily | Interproscan |
| IPR004223 all species → | Domain | Vitamin B12-dependent methionine synthase, activation domain | Interproscan |
| IPR036589 all species → | Homologous_superfamily | Homocysteine-binding domain superfamily | Interproscan |
| IPR050554 all species → | Family | Methionine Synthase/Corrinoid | Interproscan |
| IPR003726 all species → | Domain | Homocysteine-binding domain | Interproscan |
| IPR036724 all species → | Homologous_superfamily | Cobalamin-binding domain superfamily | Interproscan |
| IPR033706 all species → | Domain | Methionine synthase, B12-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45833 all species → | METHIONINE SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0008705 all species → | Molecular Function | methionine synthase activity | Interproscan |
| GO:0009086 all species → | Biological Process | methionine biosynthetic process | Interproscan |
| GO:0031419 all species → | Molecular Function | cobalamin binding | Interproscan |
| GO:0042558 all species → | Biological Process | pteridine-containing compound metabolic process | Interproscan |
| GO:0044237 all species → | Biological Process | obsolete cellular metabolic process | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0046653 all species → | Biological Process | tetrahydrofolate metabolic process | Interproscan |
| GO:0050667 all species → | Biological Process | homocysteine metabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00548 | metH, MTR; 5-methyltetrahydrofolate--homocysteine methyltransferase | EC:2.1.1.13 | Cobalamin transport and metabolism | ko04980 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
