Genomic Location: chr1:7774428...7780604
NR annotation: CAH3120841.1, unnamed protein product [Pocillopora meandrina]
Species Plumapathes pennacea · all data for this species · gene families
| CDS |
| ENSDKPT00000001477 |
| Transcript |
| ENSDKPT00000001477 |
| Protein |
| ENSDKPP00000001477.1 |
| UniProt accession | Description |
|---|---|
| P31029 | Alanine--glyoxylate aminotransferase OS=Callithrix jacchus OX=9483 GN=AGXT PE=2 SV=1 |
| Q7PRG3 | 3-hydroxykynurenine transaminase OS=Anopheles gambiae OX=7165 GN=HKT PE=1 SV=3 |
| P21549 | Alanine--glyoxylate aminotransferase OS=Homo sapiens OX=9606 GN=AGXT PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003739 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00266 all species → | Aminotran_5 | Aminotransferase class-V | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR000192 all species → | Domain | Aminotransferase class V domain | Interproscan |
| IPR024169 all species → | Family | Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase | Interproscan |
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21152 all species → | AMINOTRANSFERASE CLASS V | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004760 all species → | Molecular Function | L-serine-pyruvate transaminase activity | Interproscan |
| GO:0005777 all species → | Cellular Component | peroxisome | Interproscan |
| GO:0008453 all species → | Molecular Function | alanine-glyoxylate transaminase activity | Interproscan |
| GO:0019265 all species → | Biological Process | glycine biosynthetic process, by transamination of glyoxylate | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00830 | AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase | EC:2.6.1.44 EC:2.6.1.45 EC:2.6.1.51 | Amino acid related enzymes | ko01007 | deepkoala |
Genes whose expression across the transcriptome samples of Plumapathes pennacea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Plumapathes pennacea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
