Gene detail

Detailed information of ENSDKPP00000001478.1 in Plumapathes pennacea

Genomic Location: not available for this species
NR annotation: XP_029195266.2, la-related protein 1B-like [Acropora millepora]
Species Plumapathes pennacea · all data for this species · gene families

Sequence

CDS

ENSDKPT00000001478

ATGACTGAAGTCGAGAGTGCTCCAAAAGCAAGTACTGACTTTGTCGAGGATGAAGCCTCAAATAAGTCTGAGAATATGAAAGGAGCTGTGGAGGAACCTGGTAGTCCCAAGGAAGCGAACATCGCAAAAGAAGGAGTTGGTAATTATGACTCGATGgtgtggttttctttttcagctgAGGAAGCTAAATCAGCTGTTGTCGTAAAGGCCGCCAGTTCTAACCCCAAGCGAAAACCCAAGGGTAGCGAATTCGCGGATATAACCAATTGGCCTACTCCCGGCGAAATATCGGCTTCCAACTCTATCAAGGTAAATATATTCATGTGTTGTATATTTCGATACGATCGTGGCCGGCAGAAGTGGGTTCCTCTAAGTTTAGATACAGATCATGCAGCAGATGCAGGTGGAGTCAACTCAAATGAGAAAGGAAGTCCATCACCAGATGGAACAGGCAGCCATAGAGGAGCGCGCTCTCCCAGCAACAAGTTTGGGTCTTCTGTAGGCCCAGGTGGAGGAAGGTCTGAACGCGGCAGTAGGGGAGGACGTGGTGGTGGAAGAGGGGGACGTGGAGGACGAGGTCGTCGTTCACCTCGAGGTAAGGGTTTGAGTGGTGATCTTACTGTACCATCACCTGCTGAAGTATTTTTTGGCACAGAAGAACCAAAAGCAGAGTGGAACGAAGAtaactgctttttttttctcgaaagtATAGTAAATATTTTGTGGACATTTCTTAGATTAATTTACTTGAATACACATATGGATGAAATGGGCTTCATTCCAATTGGACTGGTGGCTAGTTTCTACAGGGTGCAGGCACTCACTCGTGACATGAACACCATTCTTGAGGCTATGAAAGACAGTGAGATTGTAGAAATTGTAGGGCCCAAGATGAGGAGGAAGGAACGACCCACAGCATGGGTGATCCCAGCAAGTGCTCCTATTACAGGTTCGTCACATAAACAAGGAGGCTCATTCTTATACAAATTCCTTGTTTGTGAGGTGCTGTTACAGACATGCAGCATCAATCCTAAAATAGTAATTCACAACTCCGGCTTGGGTGATATTGAGCAGGAAGAATTGGACTTCCAGTTTGATGAAGAACTGGAAAACCAAGGGAAGATACCTACGTATTCCACACCTGACTGGGATGATGATTCAGACGATGATCTGGACGATCAAGACATCCACAAAATCATGATTGTGACGCAAACACCTCCAGCGATCAAGAAACACGACCGCACGGGCAACTTCATGAAGAGAGCCAAGATGACGGCCGAATTTGCTAAAGTCATCAATGATGGCTTGTTCTATTATGAGCAGGATCTTTGGGATGACGGTGATGACTGCTACCTCAGTAGAAAGATTGAGCTGTCGTCGTCCTGGAAGAGAGTGGAGATCGTCAGTGCAGACAAGTTCCTATACCAGCGTGACGCTATCGAACCGCGAGCGCGCTCCTTCACGGAGAGGCACTCCACGTCGCCACCTCCGTCTTCACAAGTGCCGAACAAAACTCTCTCGCCCAATGCCGAAGTGTTCAGGCCGCGCTCCAACACCATGCCAAGTGAACCGGTGTCACGCTCTCTCCCCACCTCAGTACCCGAGTCTCCACAGCACATGCAGTACGCACGGCAGGGGTCACGCACTCCCAAGAGAAAGGACCCCAAAGCCGCGCCAAGGTTTTACCCGGCGATCAGCAAAGAAAACGTTAACGACCAGGGGCCGAAGAAGAGGAAGACTAAGTACGGGCTGAACCCACCCGTGGAACAGCACGTGGGCTGGGTCATGTCATCTAAGGACTATCCACCGCCAAAAAGTGGTGTTACTGTGGGCAGCTATGGCTCCACGCCTCAGCAGATCCCACGCTTCCAACATCCCTCGCACGAGCTGCTGCGAGAAAATGGTTTTACTCAACAACTTTATCACAAGTATCAGCAAAAATGTATCAAAGATCGCAAGAAGCTTGGTGTAGGACAGTCACAGGAGATGAACACTCTCTTTAGATTCTGGTCGTTCTTCCTTCGGTCTCATTTCAACAAGAGTATGTATCAGCAATTTAAGAAGCTCGCTCTGGAGGATGCACAGGCAGGATACAGATATGGTCTGGAGTGTTTGTTTAGGTACTTCAGTTATGGACTTGAAAAAAGGTTCAGAGTTGAAGTTTTCGAGGACTTCCAAGAAGAGACGATGAGGGATCACGATCAAGGTAACCTTTATGGGTTGGAGAAGTTCTGGGCATTCCTCACTTATTACAAAGGAAAAGCGAGGTTTGACGTGAAACCTGAACTTAAAAAGCGTCTGGCAAAATACAAGACGATAGAGGATTTCAGGAAAGATcCTATGAATCAATTCCCAGTGGATCCCTACAGCAACAAACCGCGCCCTAAAACCGGCTCACAACGGGAGAGACAGCACAGCGACTCAAGAGACGCGGCGGCAGGAGACGCgaagaaaactgaaaaatcCTCGCACCGTGAAGACAGGGAGAGGAAAGGCTCGCATCGCCAGACGGACGGACGGGAAAAGAAGAGCTCCACGAGCGAGGCCAAGGAAAAGAGAGTTTCACAAAACGATGCAAAGGAATCGAAAGCTCCAGAGAACGATGCCAAGGAGCGGAAGGGAGTAAATCGTGACGATAAAGAGAAGCGGGCATCTCAAGGTGACGGCAAAGACAAGAAAAGCTCGCACGGCGAAGGAGCGACGGCCGAGAGTAAGACGGCTAAACGGACTGTAACGCCTGAGAAAGCGGCGGCTGAACACGCCACAAAGAACAAGCCCAAGCCAAGTGCTAAGAGCTCACCAACTGTGAAAGATGCGCAGTGA

Transcript

ENSDKPT00000001478

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q659C4	La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 SV=2
Q6ZQ58	La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3
Q6PKG0	La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005211 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21071 all species →	LARP1_HEAT	LARP1 HEAT repeat region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006607 all species →	Repeat	LARP1-like, DM15 repeat	Interproscan
IPR006630 all species →	Domain	La-type HTH domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR045180 all species →	Family	La domain containing protein	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792 all species →	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000339 all species →	Molecular Function	RNA cap binding	Interproscan
GO:0048255 all species →	Biological Process	mRNA stabilization	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0045727 all species →	Biological Process	positive regulation of translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDKPP00000001478.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.