Gene detail

Detailed information of ENSDKPP00000016424.1 in Plumapathes pennacea

Genomic Location: not available for this species
NR annotation: KAJ7390472.1, Rho guanyl-nucleotide exchange factor [Desmophyllum pertusum]
Species abbreviation PPENN · all data for this species · gene families

Sequence

CDS

Transcript

ENSDKPT00000016424

CCGCTTTCTGCAGGTGGGAAATTTGAATCCAACGACAACTGCAATCACTTGAGTTTTTACTGCAGCACGTTCTCAAGAGTCCGCCCAATATACTTTTACGCAGACTGAATTGTGCACAATACTGTCATGGCTTCGATTGGTTATGGAAGCCCTCAGCTGCGCCCGAAACTGCAAACTGCCAAAAAGTTCCTGTCACTCCAGCTGTCTCAGACAGGACATGCCATATCTTCTGAGTTCAGTAGCATGATGAGAGGCCAGGCATTGTCCAGGAAGAGGAAAAGAGTCATAACCGAAATATTCTCAACTGAAAAGATGTACCAAGATCATTTGAAAGCCATCACCACAAACTTTTTGGCACCCCTGAAAGTGGCATGTCTGCTTCCGTCAAATGCCCTTGATACAATATTCTCCAACATAGAAAACATCCAAGAAGTCAACAGAGAGTTGCTTAACCACATGGAAGATCTTGGAGTTGCAGATGCCTTTCTGGCTTTAGCACCATTCATCAAGCTTTACAGTACCTATGCCAATAACTTTGGAAAAGCTTCTGCAACTCTTCAGGAATGGGAAAAGAAGTCTCCTGAATTCCTCAGCTTCAAAACCAAACAGGAGTCTCTGTCAAGTTGTAAAGGACTAAAGTTGGATGCCCTGCTGATCACTCCAGTGCAGCGTGTGCCAAGATATAAGCTGTTGCTGGAGAGTCTGCTGAACAAAACCCCCCAAGACCACGCTGACTTTGAAAAGTTACAAGATGCCACGTTTGAAATCAGCCAAGTTGCAAGCCACATCAATGAGAACATCAGGCAACACGAGAACTTCCAGAAAATGCTCAGCATTCAGAAGAGTTTGACGGGAGATGGTGCACCAAAGATACTGGCTCCAGgGAGGCTTTTCATCAGAGAGGGGCCCTTACTGAAGGCCTGCAGTGACGGCTCACAATCGCAAGAGagaatgttttttcttttttcggaTATCCTTCTTTATGGCAAGAAAAACAGCAGCTTGGATAAAGATCAGTGTACATACACCTGCCGTCGCGTCCTTCCGCTGATTGACTGTGACGTGAAGAATTTGTTGGGACATTCAACCGAGGCAGACACTCCCCGCTCTGACGTCGGAGCTTTGTTCAAGGTGACCTGTAAAGAAAAGTCGCTTTTGCTGTATTCCAAATCCAAGCATGAGGCCAATTCCTGGCTGAGAGACATCGAAAAAGCCATCAGAGAACTCCAGAAGTGCCGCGCCTCACTAAAGAAGCCAAGACGAGAGAGTGAACTGGGCACGAGGGTCACTCCTCTCAGGCGATCGGCGTTCATCAAGAGATATCAGCGGATTTCCAACAAAAAGGAAAATGACGTGAAGTACGAGAGTCCCAGCCTGTGCATGAAGGACGGTCTATATCCGATGAGGAGAGAATTCCAGACAAAGGTCAGCTCCGCCAACAAACTGACTCCACTCACGAAAAACGCGGCAAAGAGCAAAGAAACTGTGATCAACAGCCCCTGGAACCAGTCGTGCCGCACGCTCTCCTCGGCAGGTGTGTTGACGCGTTCACAAGAGAAGAAACATACAACGGCCAGCGGTGTGATGACGCGGGCTCAGAAGAGAAAACTGTCACTGGTTGAGAATGAGGTCTTCACGCCGCAGCAAGGAAAGAAACAGCGTCTGAAACCCAGGCTCAATGTGTCTTGTGTCCGCGCGGTCAGATCACCTCTGAAAAGCGTTGTTCACCAAGTAAAACACACGCCAgccaagctgcgaacgaccaCGTACGACATTGCGCAACAGGACCTGGTGGACTCAACCAAGTGCGGAATAATGTGAGACAGTGTGGACAAGCAGCGACGCTACAGACTCCACTTGGGTTCTATCGGCAACCTGATCAACGATCCCATGTAAAAACGGCCCAGACTCAATTACACGAGACATTTCGATTATTGATGATAAATTTGACAAAAGTCCTTATCTGTTCAGCCAGTGTTGTCTGTAATTATCATTGCGGTGAAATAACATTTCCTCAAGGGGTAGGGGTCGGGTGAGAGGATAATTGAtaaccacccctcccccgtttACTGAAAAGGTCTCCAAAATCAAATCAATTGCGTGGTACTGTACGGAGTATTTGCAGAGGATTGTGACTGTGCAGTAGACTCGCTCCGCTCTTCGCTGATGTTTGTGTAATAGCTGCACCTTGTATTTTCAGTCGGCGTCTCTAATCCACTGGCCTTGAGAGATAGAGGAGGCAATCGTGAAGTTTGACTGAACATTTTAAAGCATTTTCTCAAACAAGACATTTTGGCGTGGCCGTTCGACTGGTTTGCCTTTGGGAACTGGACGACTTGTCGAGATTGGCTGTCAAGTGAAAGCCCACTTTTCAAAGTACTGGTGCGAGTGAGTGACGTCTGCAGGTCACGTGATGCCTGAAACTTCTTCCTCCCGGAGTCCTGGTTTCTCATCAATAAcgacgccatcttgtttttgctttctCTCCCGACCTGACTGCTGTCCAGACTGTCTAGACGAGACCAAAGTTCAGTGATTTACATCTTCTATTTCTAAATTCATTCACTTTATTCTCAAATTGAAAAATCCTATCTGCTGTGCCTGTCAAAGTTTAGCTTAGATTATAAGTAGCTGTCGCTAATCGATCTTTCGTCCATTGTCTTTTGTTCGGAGGGAGATCGATTTCCGTTCGCATATCGATTAGATTTATCCAGAGCCGCATGACTTATAAGTGAACTAAAAATAGGGTGTGCTTTGACCAGACATAAGAACGCTGAAAGTATTACTGATAAATTCTTGGCTTTGAAAGCAGTGCAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q69ZL1	FYVE, RhoGEF and PH domain-containing protein 6 OS=Mus musculus OX=10090 GN=Fgd6 PE=1 SV=2
Q6ZV73	FYVE, RhoGEF and PH domain-containing protein 6 OS=Homo sapiens OX=9606 GN=FGD6 PE=1 SV=2
Q553D3	Rac guanine nucleotide exchange factor JJ OS=Dictyostelium discoideum OX=44689 GN=gxcJJ PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005931 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR051092 all species →	Family	FYVE, RhoGEF and PH domain-containing	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12673 all species →	FACIOGENITAL DYSPLASIA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005089 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20683	ARHGEF3_8; Rho guanine nucleotide exchange factor 3/8	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.