Gene detail

Detailed information of ENSDKPP00000021350.1 in Plumapathes pennacea

Genomic Location: not available for this species
NR annotation: XP_020617075.1, F-box/LRR-repeat protein 2-like [Orbicella faveolata]
Species abbreviation PPENN · all data for this species · gene families

Sequence

CDS

Transcript

ENSDKPT00000021350

CGCGCGTAAGTCTGGGGAAACAACACAAAAAGAGTGTTTTGGACCGATGAGGTTACATTTCTTTGGGAAAAGTTATTCCTGAACAATTCATGTACTCTAACCATAACAGCCATACCAACCATAACCACGTGCACCTCAGAAGCAGTACTAGAAGCAGATTTGAGCTCCACCACTTCAATACAAATGAAGACCGGGCTTTGATTAACAAGAAACTCCCCAGGGAACTAATACTTAGgatattttcatttttagatGTAGTTACTCTGTGTCGAAGTGCACAGGTTTCAAAGCTATGGAATGTTTTGGCTTTGGATGGAAGCAATTGGCAGAGGGTAGATCTGTTTGACTTTCAGACAGATATAGAGGAGATTGTGGTACAGAACTTGTCCAGGACATGTGGTGGTTTCCTTAGAAGGTTGTGTTTAAGAGGCTGCAAGAGTGTTGGTGATACTGCTCTTAGGATATTTGCTCAACAATGTAGGAATATCGAGGAATTAGTCTTAGACGGATGTCGAAAGATTTCAGATAGCACCTGTGTTAGTCTAAGTACCTACTCTTCACAACTCAGACTTCTAGATCTCTCATCGTGTCAACAAATCTCGGACAACTCGTTAAGAGCTTTAGGtcGAGGTTGTGTGAAGCTGCAGTACATCAACATTTCTTGGTGTAGTCAGATTTCTTTCCATGGACTAAGAGCCCTGGGCCTGGGTTGTCAGCTGCTCAGAGCTTTTATAGGAAGAGGCTGCCCACTGATATCTGACGAAGGAATGTTCCACTTAACAAAGAATTGTTCACAACTTGAAATAATAGACCTGCACAGTTGTGATAATATCAAAGATCCGACGGTGAAAGCCATCAGCACTCACTGCAAAGACCTGgtctttttgtgtgtgtctGGCTGTACCCAGTTGACTGATATAGCGCTACAACATTTAGCCAGTGGCTGTCACAATCTTGGGACTCTGGAAGCTGCACAGTGTTCACAGTTTACAGATGCAGGCTTTCAGGCGCTGTGCAGGGGCTGTCATAATTTACAAAGGATGGACCTGGAGGAATGCCTACTGATCACAGACACGACATTAAATCACCTGTCCCTGTGGTGTTCAGGGTTAGAAAAGCTTAGTTTGTCGCACTGTGAGCTGATAACAGATGAAGGAATTCGTCAACTAGGAAGCAGCCCATGTGCCGTCGAGCATCTAGAAGTCCTGGAACTCGACAACTGCCCCCTCATTACCGATAGTGCATTGGATTATTTGACGCATTGTCAGAACTTGAATAGAATAGAGCTTTACGACTGTCAGTTAATAACGAGGGCTGGCATAAGAAAGCTTAAGacCTATCTTCCGGATGTCAAAGTGCATGCATATTTTGCCCCAGTCACCCCTCCCCCGAGTGTGGGCGGTGGAAGACAGAGAATGTGCCGTTGCTGCGTCATTGTCTAGTGGACCATATTTGTAGGTTTTACAGGTTTTGAATGCACGTGTCAAACGCCCTCTTACTATAACTCAAGCTGCTTGTGAAGCACTGCCGTGGAACCCCGTACGCAGTCTTGTATAAATCCGTGGATCATGCGAATGGTGAAGCAGACCTTATACGAATAGGGCCGCCACTAACTACCGGAAAGTCACGTTTGTCAAACAACTAAAAAATGAACTAGATCacgagaaaagaagaaaaatctCGATGTGATCGTGACGTCAGCCATTTTGTGTGTCGCGTGTCATCCATGAATTGTCTAAACTTGCTTCTACTGAACATCGCATTCGTTCGTTATCGTTATCGTTATCgtttacttttctttttgagGGAAAATTAACCACTTGGATCCCCGGAAAGTCTGAGGCTTGTGCTGTGAAAGCACTGTGGCGTAGGCTAGTTGATACATTGATCTCGGACGTTTCTTTTGATGGCAGTTTATTAGTGTCTAGTTGGTGGTGGTCATATTCGCACAATGTGAGTCTGCGTAATGTACAATGCATGTTATGCTGCTGTAgtttcaatattttattattcttttttttctgtacaTAGGCAAGGTAAAGTATTGGCTTTTATAGGAAGGACGTCTTCATTATGCCGTAAAAGTAGTAAGGTGTTCTAATAttaatttaggcccggtttaTGTTAAAGATTTGGTCACTGGGCCAGCCTTCTCCCCTAAGTGCACAACTTTTTCTGCATATAAACAGCGTCTTCTTAGTCGGCCTCTCTTATCGTTTTGTATATTGCAGAGGGGATtttttaggccccgtttatGTGGAGAAATAGTTGTCCTGGAGACCCGAGGCATCCTCCTCCTCGACTCAACCTGGTCGCGCCAACTGTTCATACATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6H779	F-box/LRR-repeat protein 2 OS=Bos taurus OX=9913 GN=FBXL2 PE=2 SV=1
Q9QZH7	F-box/LRR-repeat protein 20 OS=Rattus norvegicus OX=10116 GN=Fbxl20 PE=1 SV=1
Q8BH16	F-box/LRR-repeat protein 2 OS=Mus musculus OX=10090 GN=Fbxl2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005925 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.