Gene detail

Detailed information of ENSDKPP00000027928.1 in Plumapathes pennacea

Genomic Location: not available for this species
NR annotation: XP_020630769.1, U2 snRNP-associated SURP motif-containing protein-like [Orbicella faveolata]
Species Plumapathes pennacea · all data for this species · gene families

Sequence

CDS

ENSDKPT00000027928

CCGCCCGATGAGGGGCTCGAACCCTCGACCCTGGGATTAAGAGTCCCATCAACACGAGCCATTATGGCCGCCAAAAAGAGTGGGGATAAGAAGTCCCTTCCTTGGGGCTTGTCCCATGAAGGTCTAAAGCCTGGATCAATGAAGTCCATATCGGAGAACAAGTTGAAGGCCTTTTCAGTGGGTCTAATGAACACGTCGCTCAGGAAGTCTGCTAAAGTAAAGCAGGACAtcgaggaaaagaaaaaggtaACTGTCTTAATGATATATCTGTTATTTGCTTTGAAAGAGGAGGAGGAATGTGCCGAGGTTTTCGCAGATTTTGTGGCTTCGTTTGAAGATCCTCGTGCAAAAGGAAAGACGTTTGTACGAGGAAATACGATCAACCCAGAAACGAAAGAGGAGAGTCCTAGTGGGCAATCAGGAAAGACCTACAAACCAATGGCTAAGTTCAGTTCAACCATcatggaacaaaaaataaagaacTTGGAACCAAGCCCAAAGATTGAGCAGAAAAAGAAGacgaaagaaaaggaaaagaagaaaagtaaTCTGGAGCTTTTCAAGGAGGAGCTCAAAAGAAAATCTTATCAGTGCAGCATTTGTTGTACATGTAAGAGAGAGACTGATATCTACAACACTGGTTCCCATGACACAGGAgatccaacaacaacaaatcttTATATTGGAAACATCAATCCAGCAATGAATGAGGAGATGTTGATGAGACTGTTTGGAAAGTATGGTCCACTGGCAAGCGTGAAGATCATGTGGCCAAGAACAGAAGAAGAGAAATCAAGGAATCGAAACTGTGGTTTTGTGGCTTACATGCGACGTAAGGATGGAGAAAAGGCACTTGCAGCTTTAAAGGGCAAAGAAATCATGAGTTACGAAATGAAGCTAGGCTGGGGTAAGGGAGTCCCCATCCCTCCACACCCAATCTACATCCCTCCAGAGATGCAGGAAAACAACAAACCACCCCCACCATCTGGGCTTCCATTTAATGCCCAGCCAGACAAAAAGGCAAACCAGGCAGGTGCAGCTCAAGAGAATGCTGAAGGGGAGAACGGAGATGTAGACCCTAATGGCTTCAACAAGGAGGTGAGACTTTATGTTGCTGCTAATTGCCTGATCCACCGGAGTATAGAGTTTGTGGTGCGTGAAGGACCCATGTTTGAAGCCATGATTATGAACCGGGAAATCAACAATCCAATGTTCAGGTTTTTGTTTGACAACCAAAGCCCAGAACACATTTACTACAGATGGAAGTTATTTTCTATACTCCAGGGTGACTCTCAAACTAAGTGGAGAACGGAGAAGTTTAAGATGTTTACAAATGGATCATACTGGAAGCCACCCCCCTGCCGCCAATTCACCATGAGTGCAGCTGCGCAAGCTTCTTCAAGACTAGCACCCCTTCCCCCAGACCTACAGCCTGTCGATATTACACCCAGCAGCAGCagtggagggggaggggatgggGATGCCGTTGCAAGCATCAGTAACAGTAACACTAGTACATTTCTGCTCTTGATTTACAGACAACGCGACAAGCTGGAGAACTTGTTGAGAGAAATATCTCCAGAGAGATCCAAGATTGCTGAGTGCATGGTATGGTGTGTAGACCATGCAGATGCAGCAGACGAGGTCGCTCAGTGTATTTCAGAGTCCTTGTCTATCTTGGAAACTCCTCTACAAGTGAAGATTGCTCGTCTTTACTTGGTTTCTGACATCCTACACAACTGTTCACACAAGATCCCCAACATGTCCTTCTACAGAAGAGGgTTTCAAAAGAGCCTCCCAGAAACCTTCAGCCATCTCAACAAAGTTTTCAAAGCAATCAATGCTCGCATGAAGGCGGAACAACTCAGAaaacaagtGATGAGGTGTTTGAACGCATGGATGGACTGGGCAGTTTATCCGCCAGATTTTCTGGAGAATCTTGAGTCCGTCTTCTTAGGTCAACCAGACAGACCTGGCCCCATTGAGCATTTCATGACGGCAAAAGCGGCTCTTGATATCGACGGAGTTCCCTTCGCCGGAGACCAGAGTTTGGGTGGCCTTCCACTCAGGGGATCCCAGGGAAGATTTGATGGCATACCACTCAAGTTAGCTGATCTCGACGGCGTACCGCTGTCCGCAGTGGATATTGATGGAGTCCCAAGCGTTCCTCACGTGGCCTCCAAATGGGACCGGCCCGAGTGGGAGAGAGTTGACGAGCTGAAATTGTTGAGTATTGTCACTTTCGATCTGTCTAGTTCGCCTTCGCAAGAAAAATCTCCGAGCCGAGCCGAGGAGCAGTCGTCAGCGTCCGGAGACACGACGGCTCGCGTTACGGAAGTTGACGAATCGCGGCGAAAGAAGCTTCGGGAAATCGAGCTCAAAGTAGCTGAATATGCGCAGAAACTGGAGGCCAAGGGCGAGAGCAACATTGCTCAGCAGTGTAACAAATATCGGGCCAAGCTACTGGAGGCCAGTGAACCGAAGCCcaagaagaaaaaagttgGCAGGAGCCGCTCGGCCTCTCCTTCAGATCCTAAAGTTCGGTCAAAGTCTCCGCAGTCCTCCAGCAAGAAACATCGCAAACACCGCTCTCGATCTCCCAGCAGCTCCTCGTCCCGCTCCAGAAGCAGGTCTCCACTCGGCCTATCACTCCAGGTTAGAAATAAACACGCTGCAAGTTGTGACTTTGTGACAGTCGCATACGCTAGTCAATGGCCAATTTAG

Transcript

ENSDKPT00000027928

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R7X2	U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii OX=9601 GN=U2SURP PE=2 SV=1
O15042	U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens OX=9606 GN=U2SURP PE=1 SV=2
Q6NV83	U2 snRNP-associated SURP motif-containing protein OS=Mus musculus OX=10090 GN=U2surp PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003564 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04818 all species →	CID	CID domain	Repeat	Interproscan
PF08312 all species →	cwf21	cwf21 domain	Domain	Interproscan
PF01805 all species →	Surp	Surp module	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006569 all species →	Domain	CID domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013170 all species →	Domain	mRNA splicing factor Cwf21 domain	Interproscan
IPR047488 all species →	Domain	U2-associated protein SR140, cwf21 domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR000061 all species →	Domain	SWAP/Surp	Interproscan
IPR035967 all species →	Homologous_superfamily	SWAP/Surp superfamily	Interproscan
IPR051485 all species →	Family	SR-related and CTD-associated factor	Interproscan
IPR035009 all species →	Domain	SR140, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23140 all species →	RNA PROCESSING PROTEIN LD23810P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDKPP00000027928.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.