Genomic Location: chr5:8194024...8196261
NR annotation: CAH3177865.1, unnamed protein product [Porites lobata]
Species Plumapathes pennacea · all data for this species · gene families
| CDS |
| ENSDKPT00000029092 |
| Transcript |
| ENSDKPT00000029092 |
| Protein |
| ENSDKPP00000029092.1 |
| UniProt accession | Description |
|---|---|
| Q9CXV1 | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Mus musculus OX=10090 GN=Sdhd PE=1 SV=2 |
| Q6AZR3 | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial OS=Xenopus laevis OX=8355 GN=sdhd-a PE=2 SV=1 |
| Q6PCT8 | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sdhd PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008624 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05328 all species → | CybS | CybS, succinate dehydrogenase cytochrome B small subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007992 all species → | Family | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybS | Interproscan |
| IPR034804 all species → | Homologous_superfamily | Fumarate reductase/succinate dehydrogenase, transmembrane subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13337 all species → | SUCCINATE DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005740 all species → | Cellular Component | mitochondrial envelope | Interproscan |
| GO:0005749 all species → | Cellular Component | obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | Interproscan |
| GO:0006099 all species → | Biological Process | tricarboxylic acid cycle | Interproscan |
| GO:0006121 all species → | Biological Process | mitochondrial electron transport, succinate to ubiquinone | Interproscan |
| GO:0008177 all species → | Molecular Function | succinate dehydrogenase (quinone) activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
| GO:0048039 all species → | Molecular Function | ubiquinone binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00237 | SDHD, SDH4; succinate dehydrogenase (ubiquinone) membrane anchor subunit | - | Non-alcoholic fatty liver disease | ko04932 | deepkoala |
Genes whose expression across the transcriptome samples of Plumapathes pennacea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Plumapathes pennacea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
