Gene detail

Detailed information of ENSDKPP00000041382.1 in Plumapathes pennacea

Genomic Location: chr8:1959616...1978876
NR annotation: CAH3165909.1, unnamed protein product [Porites lobata]
Species Plumapathes pennacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSDKPT00000041381

ATGAAGAAGGGTAAGGTTCCCAGGAAAGGCTTTGCTCCTACCATGGAGCAAATAAACGCGGACAGAATTACACAGCTTGCAAACAAGCATTGGCGAACAAGTGGAGCAAGACCTCCATATGAACCAcagGTGGTCGATAAGATTTATTTGGAGGAGTTAAAGAACAGCAAATTTGCAGTGAAGAGGGCCATGCTTCTAGAGTTCAGCCAGTACATGGAGAACTTTCTGTGGCCAAATTTTGATGCCAACAAGGCTTCTCTGTCCCATGTCATGTCTATTGTGGTGATGGTAAATGAGAAGTTCAGAGAAAGTGTTCCGCCGTGGGAGTGGTTCAAAGAACACCCAAAGGAATTCCCAGAACTTTTTCGAAGAATCTTAGAAATCAGCCTTGCTGATGAGAAGgtgtTGTCAACCAAAGAACAAACCATTATTTTGATCTTCCTTATCCACTGCTTTAACAGCCTGGAGATGGATTTGATTCGGGAACAAGTTCAGCATGTTGTGTCGCTGCTGATGTGGTCCTGCTTACTGGAGGGTCGACTTGAGCAGGAACTGAAAGTCACGCCAAAGTACAAGAAGTTCTGGGCGCATCTCAAAAAGAAGGAGAACCAGGCTGACGATGCAACGAAACAAAGGGTTGAGAAAGAGAGGAAGTATTTGTCAAACCTGGTGCACAAGTTTGTTGGAGTCTTGGAGTCTATTCCAAGTACAGGTGCTGTAGACATGGACAAAGTTCACTACTGTGAGAGATTCCTGGAGCTTCTCATAGATTTGGAGGCTCTGTTGCCGACCAGGCGGTTCTTCAACACGCTCATAGACGATCATCACATTGTGGTCAAGTGTCTCTTGTCGAATCTTGCGCAGCGCGAGGAAGAGGGGAGGCTGTTTAATCAGCTTCTAGACATGTTGAAGTTTTACACTGGTTTCGAGATAAGTGACGTTACAGGTATGGCTCTTACTGACCATGAGATGGTCGATATCCATTACAACAAGATGGCTTCTTTACAGAGGGCGGTATTCAAGTATTTCCCAGAACTGCACGACTTTGCCATGAGTAACATCGCGGGGATCGACACCAGAGAAAGTCTGCTGCAACACTTTGGATCTCTCCCGAACAAGACTCTTCATGAAGTAGCGGCGTACCTGAAAATGTTGCCTGCACCAGAGGATGTTGGTGTCGAGAGTAACAAGGAGTTTTTGTTAGAACTTTTGGTGTCTCGCCATGAACGTCGGCTGTCGCAAATCGATGCCATCAATGAAATGCCTCTGTACCCAACAGAGCAGATTCTGTGGGACGAAAACATTGTACCAACTGAGTTTTATTCCGGAGAAGATTGTCTGGCGTTGCCCAAGTTAAACCTGCAGTTTTTAACACTTCATGATTATCTGCTGAGGAATCTGAACCTGTTCAGACTAGAATCAACCTATGAGATTCGTCAAGACATCGAAGATGTTGTTGCAAGAATGAAGCCGTGGATGAACGAAAGTGGTCAGACTGAGTTTGCTGGTTGGGCAAGAATGGGAGCGAGAATTGTTAACTTCAGCATAATCGAGGTTTCGAAACCCAATATCGGGGAAAAGCGGCCCTCTCGCGTCAGAGCTGACGTCACGATCAACTTGAACATGAGGCCGGAAGTGCGTGGGGAATGGGAAGCGCTTCGAAAGCACGACGTTGTGTTCGTTGCAACCGTACGACCAACTCAAAGCGGACCGGTGCGTTACGACAGAAAGAAACCCTTCAGAGAGCAGTTTGGTGTGGACTACGTACGCGGGGCGGAGATTGAAGGCATGTTGGACGACCAAGGCAAAGTCATAGAGGAAGGCCCCGAGCCCAAACCCGAGTTGAAAGGTGATGACCGCACATTCCGTATGTGGCTGGACACGAACCAGTACCAGCAAGACATGGCTGCCACTGTGCAGGGCTCCGAGGACACTTACGAAACGTTCAACATTCTTGTTCGAAGAAAGCCGAAGGAGAACAATTTTAAGGCCGTGTTGGAGACTATTCGTTCGCTCATGAACACCGAGTGCATCGTCCCAGATTGGTTACACGACATCTTCCTGGGATATGACGACCCTGCAGCGGCACACTACAGCAGgatGCCAAACCAGATCAAATCACTGAACTTCAACGACACATTTCTGGATTTCGAGCACCTCAAAGCTAGTTTCCCAAAATACGTGGTGAATtgTGTTAGTGAAGACCCAAGCTGCCAAGTGCCTCCCTTCAGGATCACATTTCCCGATGTTTCTTCGCGCAAGAAGCGGAAGCTTGACGAAGAACCAGAACCAGTCAAACAGGAAATACTGGTTGAGCCATTTGTGGTGCCCAACAGGGGACCGTACCCTTTCAATCAACCGAAACGCAATGCTGTTCCCTTCACGCCAACTCAAGTCGAGGCCATCAGAGCGGGAATGCAACCTGGCCTCACCATGGTTGTCGGGCCTCCTGGTACGGGCAAAACGGACGTCGCAGTGCAAATCATTTCCAATCTTTATCACAATTTCCCCGAGCAACGAACCCTGCTCGTCACACACTCTAACCAGgcGCTGAATCAGTTATTTGAAAAGATTATGGCTTTGGACATCGATGAACGTCACCTCTTGCGTCTTGGGCACGGCGAAGAAGCTCTAGAAACCGAGAAGGATTTCAGCAGGTACGGCAGAGTTAATTTTGTCTTGGCCAAGAGGTTGGAGCTGTTGAAGGAAGTTCAGCGACTTCAGGAGAGCCTTTCTGTACATGGAGATGTTTCATACACGTGTGAAACTGCTGGCTACTTCAACCTCTATCAGGTGGTTTCTCGGTGGGAAGAATACACGAGCAAGCTGAAGACCAGGAAAGGAGACGTACCAGCAATTGCGGAGCTATTCCCGTTTATAAGGTTTTTCGACAATGCACCACAGCCCGTATTCAAGGGGAAAACTTGGGAAGAAGACATTGAGATAGCGGAGGGCTGTTATCGCTACATCAAAAAGATTTTTGAGCAGCTGGAGGAGTTCAGGGCGTTTGAGCTTCTTCGAAGTGgTCGTGACAGAACCAACTACTTGCTTGTGAAGGAAGCGAAGATTATCGCTATGACTTGCACGCACGCCGCTTTGAAGCGCGGAGATTTGGTGGAGCTCAGCTTTAAGtACGATAACGTCTTAATGGAAGAAGCGGCGCAGATTCTGGAGATTGAAACTTTCATTCCTCTTCTACTTCAGAACCCCCAGGATGGTTACAATCGGCTAAAGAGAGTTATTTTAATCGGCGACCACCACCAGCTTCCTCCAGTGATAAAGAATATGGCGTTCCAGAAGTTTTCTAATATGGAACAGTCCTTGTTCACCCGGTTTGTTCGACTCGGCGTTCCAACCGTCCAGCTGGATGCACAAGGCCGTGCCCGCCCAAGCCTGTGTAATCTGTACAACTGGCGCTATAAGACGCTTGGTAACCTGCCGCACGTGCGCCGGTGGCCTGAGTACTGCGTGGAGAATCCTGGATTCTTTTATGATTTCCAGTTGATTGACGTGCCTGACTTTAACGGCGTGGGCGAGTCTGAGCCCAATCCATACTTCTATCAGaaCCTTGGCGAGGCAGAGTATGCTGTGGCTATTTTCATGTACATGAGGTTGCTAGGATACCCCGCTGACAAGATCGCTATACTCACAACCTACAACGGCCAGAAACACCTCatccgtgacgtcatcaaacaGAGGTGTTCTGACAACCCTTTGATTGGACGGCCGAGTAAGGTGACCACAGTTGACAGATACCAAGGTCAACAGAATGACTACATCATCCTTTCCCTGGTTCGCACCAAAACTGTCGGCCATCTGAGGGACGTCCGTCGTCTGGTAGTCGCCATGTCACGTGCCAGGCTCGGTTTGTACGTGCTCGCACGTGTGAGCCTGTTCCAGAACTGCTTCGAGTTGAGGCCCGCCTTCAGTCAGCTGACAGCGAGGCCTTTGCAGCTTTATATTGCACCAAACGAGCGATATCCACCTTCCCGACCGGTCGGCGTAGCTCCTGCGCAACCTCCCCTTCTCATCCGGGACATGCCGCATATGCATCAAGTAGTGTACGACTTTTACAGTCAGTACGTTGATGCACTGAGAGCACAGCAGCAGTATGCAGCTCGCCAGGCTAGGTCTATTCCCCGTCCTCCCGTGGAGGAAACAGTTGAGAAAACAACGGAGGAGGAAAACAAGAAGGAggaagcaacaacaacaataacaacaacaacaacaattgaTGTGGAGGCAGAGCCAGGATCACCCATTGTCAATGAAGTTGAGCAGGAACAACCAAGTAAACAGTAG

Transcript

ENSDKPT00000041381

GTGGGAGGCCTGGTGTGAGCTAatggcggccatcttgaaCGTTGGCCAGACGGACAGAGCAAAATATTTCCACGCTTGTTTTCTTGCGTTTACTCGGGTTGGCTTGCAGTGTCATCAAATGAACGTGCATATCTCAGATATGCTTGGAGTTTGACTAAGTATCTTTGAGCACTGCAGCGGAGAAGCAGTATTACCAGAGTTCACCAACAACACGTGCTTCAGACATTTGGCTCATTTCGAGTCGAGATTAAACCGCTTTCCGTGGCAAAAGTAATCTTTAAAGTAATCAGAGTGCAGAAATGAAGAAGGGTAAGGTTCCCAGGAAAGGCTTTGCTCCTACCATGGAGCAAATAAACGCGGACAGAATTACACAGCTTGCAAACAAGCATTGGCGAACAAGTGGAGCAAGACCTCCATATGAACCAcagGTGGTCGATAAGATTTATTTGGAGGAGTTAAAGAACAGCAAATTTGCAGTGAAGAGGGCCATGCTTCTAGAGTTCAGCCAGTACATGGAGAACTTTCTGTGGCCAAATTTTGATGCCAACAAGGCTTCTCTGTCCCATGTCATGTCTATTGTGGTGATGGTAAATGAGAAGTTCAGAGAAAGTGTTCCGCCGTGGGAGTGGTTCAAAGAACACCCAAAGGAATTCCCAGAACTTTTTCGAAGAATCTTAGAAATCAGCCTTGCTGATGAGAAGgtgtTGTCAACCAAAGAACAAACCATTATTTTGATCTTCCTTATCCACTGCTTTAACAGCCTGGAGATGGATTTGATTCGGGAACAAGTTCAGCATGTTGTGTCGCTGCTGATGTGGTCCTGCTTACTGGAGGGTCGACTTGAGCAGGAACTGAAAGTCACGCCAAAGTACAAGAAGTTCTGGGCGCATCTCAAAAAGAAGGAGAACCAGGCTGACGATGCAACGAAACAAAGGGTTGAGAAAGAGAGGAAGTATTTGTCAAACCTGGTGCACAAGTTTGTTGGAGTCTTGGAGTCTATTCCAAGTACAGGTGCTGTAGACATGGACAAAGTTCACTACTGTGAGAGATTCCTGGAGCTTCTCATAGATTTGGAGGCTCTGTTGCCGACCAGGCGGTTCTTCAACACGCTCATAGACGATCATCACATTGTGGTCAAGTGTCTCTTGTCGAATCTTGCGCAGCGCGAGGAAGAGGGGAGGCTGTTTAATCAGCTTCTAGACATGTTGAAGTTTTACACTGGTTTCGAGATAAGTGACGTTACAGGTATGGCTCTTACTGACCATGAGATGGTCGATATCCATTACAACAAGATGGCTTCTTTACAGAGGGCGGTATTCAAGTATTTCCCAGAACTGCACGACTTTGCCATGAGTAACATCGCGGGGATCGACACCAGAGAAAGTCTGCTGCAACACTTTGGATCTCTCCCGAACAAGACTCTTCATGAAGTAGCGGCGTACCTGAAAATGTTGCCTGCACCAGAGGATGTTGGTGTCGAGAGTAACAAGGAGTTTTTGTTAGAACTTTTGGTGTCTCGCCATGAACGTCGGCTGTCGCAAATCGATGCCATCAATGAAATGCCTCTGTACCCAACAGAGCAGATTCTGTGGGACGAAAACATTGTACCAACTGAGTTTTATTCCGGAGAAGATTGTCTGGCGTTGCCCAAGTTAAACCTGCAGTTTTTAACACTTCATGATTATCTGCTGAGGAATCTGAACCTGTTCAGACTAGAATCAACCTATGAGATTCGTCAAGACATCGAAGATGTTGTTGCAAGAATGAAGCCGTGGATGAACGAAAGTGGTCAGACTGAGTTTGCTGGTTGGGCAAGAATGGGAGCGAGAATTGTTAACTTCAGCATAATCGAGGTTTCGAAACCCAATATCGGGGAAAAGCGGCCCTCTCGCGTCAGAGCTGACGTCACGATCAACTTGAACATGAGGCCGGAAGTGCGTGGGGAATGGGAAGCGCTTCGAAAGCACGACGTTGTGTTCGTTGCAACCGTACGACCAACTCAAAGCGGACCGGTGCGTTACGACAGAAAGAAACCCTTCAGAGAGCAGTTTGGTGTGGACTACGTACGCGGGGCGGAGATTGAAGGCATGTTGGACGACCAAGGCAAAGTCATAGAGGAAGGCCCCGAGCCCAAACCCGAGTTGAAAGGTGATGACCGCACATTCCGTATGTGGCTGGACACGAACCAGTACCAGCAAGACATGGCTGCCACTGTGCAGGGCTCCGAGGACACTTACGAAACGTTCAACATTCTTGTTCGAAGAAAGCCGAAGGAGAACAATTTTAAGGCCGTGTTGGAGACTATTCGTTCGCTCATGAACACCGAGTGCATCGTCCCAGATTGGTTACACGACATCTTCCTGGGATATGACGACCCTGCAGCGGCACACTACAGCAGgatGCCAAACCAGATCAAATCACTGAACTTCAACGACACATTTCTGGATTTCGAGCACCTCAAAGCTAGTTTCCCAAAATACGTGGTGAATtgTGTTAGTGAAGACCCAAGCTGCCAAGTGCCTCCCTTCAGGATCACATTTCCCGATGTTTCTTCGCGCAAGAAGCGGAAGCTTGACGAAGAACCAGAACCAGTCAAACAGGAAATACTGGTTGAGCCATTTGTGGTGCCCAACAGGGGACCGTACCCTTTCAATCAACCGAAACGCAATGCTGTTCCCTTCACGCCAACTCAAGTCGAGGCCATCAGAGCGGGAATGCAACCTGGCCTCACCATGGTTGTCGGGCCTCCTGGTACGGGCAAAACGGACGTCGCAGTGCAAATCATTTCCAATCTTTATCACAATTTCCCCGAGCAACGAACCCTGCTCGTCACACACTCTAACCAGgcGCTGAATCAGTTATTTGAAAAGATTATGGCTTTGGACATCGATGAACGTCACCTCTTGCGTCTTGGGCACGGCGAAGAAGCTCTAGAAACCGAGAAGGATTTCAGCAGGTACGGCAGAGTTAATTTTGTCTTGGCCAAGAGGTTGGAGCTGTTGAAGGAAGTTCAGCGACTTCAGGAGAGCCTTTCTGTACATGGAGATGTTTCATACACGTGTGAAACTGCTGGCTACTTCAACCTCTATCAGGTGGTTTCTCGGTGGGAAGAATACACGAGCAAGCTGAAGACCAGGAAAGGAGACGTACCAGCAATTGCGGAGCTATTCCCGTTTATAAGGTTTTTCGACAATGCACCACAGCCCGTATTCAAGGGGAAAACTTGGGAAGAAGACATTGAGATAGCGGAGGGCTGTTATCGCTACATCAAAAAGATTTTTGAGCAGCTGGAGGAGTTCAGGGCGTTTGAGCTTCTTCGAAGTGgTCGTGACAGAACCAACTACTTGCTTGTGAAGGAAGCGAAGATTATCGCTATGACTTGCACGCACGCCGCTTTGAAGCGCGGAGATTTGGTGGAGCTCAGCTTTAAGtACGATAACGTCTTAATGGAAGAAGCGGCGCAGATTCTGGAGATTGAAACTTTCATTCCTCTTCTACTTCAGAACCCCCAGGATGGTTACAATCGGCTAAAGAGAGTTATTTTAATCGGCGACCACCACCAGCTTCCTCCAGTGATAAAGAATATGGCGTTCCAGAAGTTTTCTAATATGGAACAGTCCTTGTTCACCCGGTTTGTTCGACTCGGCGTTCCAACCGTCCAGCTGGATGCACAAGGCCGTGCCCGCCCAAGCCTGTGTAATCTGTACAACTGGCGCTATAAGACGCTTGGTAACCTGCCGCACGTGCGCCGGTGGCCTGAGTACTGCGTGGAGAATCCTGGATTCTTTTATGATTTCCAGTTGATTGACGTGCCTGACTTTAACGGCGTGGGCGAGTCTGAGCCCAATCCATACTTCTATCAGaaCCTTGGCGAGGCAGAGTATGCTGTGGCTATTTTCATGTACATGAGGTTGCTAGGATACCCCGCTGACAAGATCGCTATACTCACAACCTACAACGGCCAGAAACACCTCatccgtgacgtcatcaaacaGAGGTGTTCTGACAACCCTTTGATTGGACGGCCGAGTAAGGTGACCACAGTTGACAGATACCAAGGTCAACAGAATGACTACATCATCCTTTCCCTGGTTCGCACCAAAACTGTCGGCCATCTGAGGGACGTCCGTCGTCTGGTAGTCGCCATGTCACGTGCCAGGCTCGGTTTGTACGTGCTCGCACGTGTGAGCCTGTTCCAGAACTGCTTCGAGTTGAGGCCCGCCTTCAGTCAGCTGACAGCGAGGCCTTTGCAGCTTTATATTGCACCAAACGAGCGATATCCACCTTCCCGACCGGTCGGCGTAGCTCCTGCGCAACCTCCCCTTCTCATCCGGGACATGCCGCATATGCATCAAGTAGTGTACGACTTTTACAGTCAGTACGTTGATGCACTGAGAGCACAGCAGCAGTATGCAGCTCGCCAGGCTAGGTCTATTCCCCGTCCTCCCGTGGAGGAAACAGTTGAGAAAACAACGGAGGAGGAAAACAAGAAGGAggaagcaacaacaacaataacaacaacaacaacaattgaTGTGGAGGCAGAGCCAGGATCACCCATTGTCAATGAAGTTGAGCAGGAACAACCAAGTAAACAGTAGCAAACAAACCAACAGGAACAAACCAAGTAATTAGTAAAAAACCAACAGGAACAAACCAAGTAAACAGTTTTACACTGCACTACTCGCAAGTGTCAACAAGTCACTGTCGCTTAAGAGACAATCTTCTATCTCCACCCCTCTCCCCCTACCCCTACCCCTCACAGTCCTCTCCCgatctccccctcccctccccccttttttACTCCTCCTCTATTTCGTAGTACTCAGAGACACCACAGATAAAAATGTGAAACGCACAGCCTTGGGAAATTGAACATACGAGACTACCGAGAACGGAAGCGGATAGCCAAGAAGCGACACTTGTCATACAAGGCTATTAGCGTGTGTGTGgatttttgaaataaaactgacACCTTTTTAAACCTTTGCTTTAGTAAGCTGGTTGCTGCATTTGCACTGCCAAGTCGAAATACGGATTTTGCGAAAAGGGCCACAAACGACTCTGCAATATggtttcattttctttgttttcgcATATTAATTAAACGTGCTTTTCAATAAAACAAAGATAATGTTAACTGGAATTCAATCATTATATGGACAATGAACCACCTTTTAGTTTGTTGTGGTgtgcttatttattttttcaacctTACTTGTTGGGCTTGGGCAAAGAAATCATCGCGACTGCCATAAAGAACATTTTAAGCTTGTAGAATTCTTAAAAACTTCACGCCGAAGTCTCATTTTCAAGTTCATTTTTCAAGATGGGTTTTCAGGCgatttcctttttcatttttcatttttcatttttcatttttcatcaAAATTCAATATTAAAAGCTGGAAAGCAAACACCTCTACGTGGTCTATTGCCAACTATCTTGTCATTGAAGCAAATTTATAATTCGCAATTTACTATCAGCCAGCCGCCAGGAGTCACTTCCCCCAAAATCTATCATTATTCATCACGCAATTCGCTGTGccgaaacaaaaggaaaattaGTGGGTACGGGTAAATTGTTATAAACGCTGTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60306	RNA helicase aquarius OS=Homo sapiens OX=9606 GN=AQR PE=1 SV=4
Q8CFQ3	RNA helicase aquarius OS=Mus musculus OX=10090 GN=Aqr PE=1 SV=2
O94508	Pre-mRNA-splicing factor cwf11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003643 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21144 all species →	Aquarius_N_3rd	Intron-binding protein aquarius insert domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF16399 all species →	Aquarius_N_1st	Intron-binding protein aquarius N-terminal	Repeat	Interproscan
PF21143 all species →	Aquarius_N_2nd	Intron-binding protein aquarius, beta-barrel	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048967 all species →	Domain	RNA helicase aquarius, insertion domain	Interproscan
IPR026300 all species →	Family	CWF11 family	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032174 all species →	Domain	RNA helicase aquarius, N-terminal domain	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR048966 all species →	Domain	RNA helicase aquarius, beta-barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12874	AQR; intron-binding protein aquarius	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Plumapathes pennacea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Plumapathes pennacea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →