Gene detail

Detailed information of ENSFVQP00000014192.1 in Callogorgia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Callogorgia gracilis · all data for this species · gene families

Sequence

CDS

Transcript

ENSFVQT00000015782

TGAACAGGCCTGCTATAAGGGTACATCCTAGAGGACCTAGGTACAAAGAGCAATGACTGTGGCAGAAGACAGCGCTGATACAACAACAGGACAAATGGAGCAGCGAAATACTCCTAGTCCTACGGACGGTGTAACTGGAGCACCAAATGAAGCAGCTCTTCGCGCGCTCATTGAAAGGACAGGCTGCCCAATCCAGCAGTCAAACGGCCAACGCCGCTTCGGTCCTCCTCCTGACTGGAATGGCGCAACACCACCGCGTGGCTGTGAGGTTTTCGTTGGTAAAATTCCTCGCGACGTTTACGAGGACGAACTTGTTCCCATCTTCGAGACGGTTGGCAAGATCTACGAAGTGCGTCTTATGATGGACTTTGACGGCAAGAACCGAGGCTATGCTTTCGTTGTTTACACAGCGAAGAAGGACGCTCAGGCGAGCATCAAGAAACTGAACAACTACGAGATCCGCCGTGGCAAAATGATCGGCGTGTGTTCCTCGGTAGACAACTGTAGGCTCTTTGTCGGTGGCATTCCGAAGAAAGTGAAGAAGGATGAAATCCTCGAGGAGATCTCGAAGGTCACTGATAATGTGACTGATGTTATTGTTTATCCCTCAGCATCAGACAAAACCAAGAACCGTGGCTTTGCGTTTGTCGAGTACTCAAGCCATCGTGCGGCTGCAATGGCTCGCCGTAAGCTCATGACCGGCAGAATTCAGCTGTGGGGCCATCAGATTGCTGTAGATTGGGCCGAGCCGGAGCAGGAGGTTGATGAAGATATCATGGAACAAGTTAAAGTTCTCTATGTCCGTAATCTTCTCTTGAGCACCACTGAGGATGTTATTGAGCGTATTTTCACGCAATATGGCGAAGTTGAACGTGTTAAGAAACTCAGGGATTACTGCTTTGTTCACTTCAAGACGAGGGAAGAAGCAAGGAAAGCGTTGAACGCCATGAAAGATCAACAGATTGAAGGAAGTGATGTTGAAGTAACACTTGCTAAACCTGTGGACAAGGAACAACGTCAACAAAGAGCAATGAGTAAAGCAATGATGGCGGCATCACAATACAGCTACCCTGCTACAGATTATGCCATCCCGTATAATGGCCCCACCTACCCATTCACTGTCAACCAACCTCTGTATCCATTTCCAACTCCTTTGTCCAATCAACAGTTAATCCGTCCAAGAGGCCGTGGAAGAACAGCTGCAGGCAGCAGAGCTGCTGGTGGAAGAAACTACATGTTCCCTGGGTACCATCATGGCGTGCGGCCGTTTTACGTGCCAAGTTATGAGGACTATGGAAAGAGCAGAACACCAGAGGAAAACCTTTATGATATTCTACCTGGAATGGAGCTGACGCCAACAAACCCAATCACATTAAAGCCACAAAAATCTTCAGCACATTTGTTAGAAGATGTTTGCCACAAGAACAACTGGGGAAGTCCAGTTTATACTCTGCACAGTACACAGACACCGAACGCTGAAATGCAGTTATTCTTATACAAAGTAAACATTCCAGCTTTGCCAACCCTGTATCAGCCCCAGAAACTTTGCCGCAGTGTTGAAGAAGCTAAGGCATATGCAGCAGAATATGTTCTGATACAATTAGGAATTCCATTTGAAGGACCAGAATCCCCTGTTTCAACTGTAACTACATGTGCTGTTGTCACAACTGCTCCGTATGTTGGTCGAGCAGTTGCTCCAGtGACTTATGCCGTAGCTAATGGCCGCACAGGGGACCCAAATGGATACCCAGGTTATGTATCTGTTGCCAGTGGTCCAACCAGTCCTGTTGCAGGGTATTATTTAACTTGAAAACATTATTCATGCAGGAAGTATAATTCATGCAAAATACCTTATAGAAGAGATGTAGAAACAATTCCCTGTAGGTATATTTATACTGTTACCAGAAACAAGGTACAAAGGTCTGAGAATTTGTCTGTTGTTCAATCAATTAACCCCATCAATCTTGACCAAAATCTTTCAATCAAATTTTAGTTAGATTTCCTTGAAGGCCGGGCTTCTAAAGGCATGTACATATGACCAAGtattccttgacaagttccttgctTGGAGAACTTGCCAAGGAAAACTTGCCCATGTTTACAGACTACTTCAAATGTTAACCTTTGATTGTCTTTAAGTGTCTTACTCACGCCGACACTTTgaaacttttgaaatttcaaacatttcttaATTTCCTGGCTTTGCTCTTCAAGGAAATCCAATACCACATAGTGAACAGTGAATTCATGAATTAATTTCCCAAAAATGAAATAAGCAAGTGAAAGGATTTAATTAACTGCATTTTAAATGCTTCAAATGATGATaggatttcaaaaaaatccgTAGTAATGTTTTCTATTCATAACCAACTAATATACTGTACTCACTATAATAGTTTAATTCTTGATTACTTTTCTGATTTATGTCTTTAATTCTATAAAATTTCTTATTGTCCTGTGATGTGCCTGTAAAAAGTCAGTGTTGATGACACTATTttgaaacaagaaaaaaaataggCTGTTTTTATGTTGTCCTGGTAATGAAAAATGTAAACTTATTTACTatttttgtgtatatatagatgtTAACTTGATGTATTTACATTAGagggttttttttataaaaactgAGGAAACACTGACTAGTTAACAACAAATAAGAATTTTCAGGACATTATTTCTTAgaaaatatccttatttctTTAGAAAGATATCCATGAAACAGCTAGCCAAAGCATTGGCATTTTTTTAGttcaattttcaaacatctttcaatttttcttgaaatatttaCCCAACTGTCATTGTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14709 all species →	DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR006535 all species →	Family	HnRNP R/Q splicing factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24978	A1CF; APOBEC1 complementation factor	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.