Genomic Location: chr3:25853363...25877685
NR annotation: no NCBI-NR hit recorded
Species Callogorgia gracilis · all data for this species · gene families
| CDS |
| ENSFVQT00000020345 |
| Transcript |
| ENSFVQT00000020345 |
| Protein |
| ENSFVQP00000018072.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005545 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01399 all species → | PCI | PCI domain | Domain | Interproscan |
| PF18055 all species → | RPN6_N | 26S proteasome regulatory subunit RPN6 N-terminal domain | Repeat | Interproscan |
| PF18503 all species → | RPN6_C_helix | 26S proteasome subunit RPN6 C-terminal helix domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050871 all species → | Family | 26S Proteasome and COP9 Signalosome Components | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR000717 all species → | Domain | Proteasome component (PCI) domain | Interproscan |
| IPR040773 all species → | Domain | 26S proteasome regulatory subunit Rpn6, N-terminal | Interproscan |
| IPR040780 all species → | Domain | 6S proteasome subunit Rpn6, C-terminal helix domain | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10678 all species → | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005198 all species → | Molecular Function | structural molecule activity | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0008541 all species → | Cellular Component | proteasome regulatory particle, lid subcomplex | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03036 | PSMD11, RPN6; 26S proteasome regulatory subunit N6 | - | Proteasome | ko03051 | deepkoala |
Genes whose expression across the transcriptome samples of Callogorgia gracilis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Callogorgia gracilis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
