Gene detail

Detailed information of ENSFVQP00000018780.1 in Callogorgia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Callogorgia gracilis · all data for this species · gene families

Sequence

CDS

Transcript

ENSFVQT00000021217

CCTTCGCGCGACAAAAGCTATACACTTGTTAAATTGTTGGGTCGTGGGATTAGGTTTGAAAGGaaagAAAGAACACCAAACCCAGAATCATGGCTGTGAATGTAGGAGGTCTCATTGGTATTATCGTGTTTTACATTCTCATTCTCGCTGTTGGAATATGGGCAGCGATGAAAAGGAAGAAAAGCCAGCAGACAGTTGAGGTTACGTTGGAGGAGCAAGGGAACAGGTTGGACAGGAGCGAGGATGTGATGTTGGCTGGTCGGGATATCGGTTTATTTGTTGGAGCAATGACCATGACAGCAACTTGGGTAGGAGGCGGCTACATCAATGGGACAAGCGAGTCTACATTCACAAGTGGTCTAATTTGGGTCCAGGCTCCTTGGGGTTATGCACTAAGCTTGACATTTGGTGGACTACTGTTCGCAGAAAAGATGCGTTCTCGGAAATACGTTACAATGTTGGATCCCTTCCAAGAGAAGTATGGATCACGAATGGGCGGAATGATGTACATTCCAGCTTTACTCGGCGAGATTTTCTGGTCAGGGGCCATTCTTGCAGCTCTTGGAGCATCCATCAGTGTGGTTATCGACCTGGATAATGCTACGGCGATCATTGTATCAGCGGCGATAGCAATTTTTTATACATTCTTCGGGGGTCTTTATTCCGTTGCATACACGGACATTGTACAACTCATCTGTATCTTCGTTGGACTGTGGCTCGCCGTTCCATTTGCAATGACACATTCCGCCGTAACCAGCATCACTTCGACTAAAAAGGCGTGGATCGGTGAATGGGATTCAAAATTCGCTGGCGTTTGGATGGATTATGCTTTGTTGCTTACGTTCGGTGGGATACCATGGCAAGTGTATTTTCAAAGAGTTCTTGCCTGCAGGACGTCGACCCAAGCAAAGTATTTATCGTTTTCAGCCTCGTTTGGTTGCATTGTAATGGCCATTCCTGCTGTTCTCATCGGAGCTGTTGGAGTATCAAcaaACTGGACGGAGACATCCTATACAAAACTCACGCAGAATGGAACTCTACATGCAGAAGATGCTAGTCGCCTTCTACCTTTGGTCTTACAATATTTGACCCCGCAAGCTGTCTCGTTCATCGGGTTAGGCGCAGTATCTGCGGCAGTTATGTCTTCAGCCGATTCCTCTGTACTTTCCGCCAGTTCTATGTTCGCGAGAAACATctacaaacttattttaagacccaagGCCTCCGAGGGTGAAATAATCTGGATCATTCGCATTGCGATCTTCGGAGTTGGAGCACTGGCCACAGTGATGGCACTCAAAGTTCAATCCATCTACGCACTTTGGTACCTGTGTTCTGACTTGGTCTACGCTATTCTCTTTCCTCAACTCTTCTGCGTTATTTACGTTCCCGCTTCCAACACCTACGGTGCAGCGATGGGGTACATCACAGCCGTGATACTCAGGGTCGGTGGGGGTGAAGCGGTGATCCACCTGGAACCGTTCATTGAGTATCCCTACTACAACTCCACCGATGGCCAGTTGTTCCCGTTTCGCACCTTCGCCATGTGCTGTTCATTCATGGCAATAGTCCTGGTGTCTTATTTAACGAAATTTTTGTTCATGTCAAAGTTCTTGCCGAACAAGTGCGACATTTTTAAGTGTTTCGACGAAGAAATTGTGCTGCAGTTCGAGATGAAACAAGACGCGGACAGAAAAGTTTCAACTACTTTGGTGTAGATTAAAACGGTCCAATGATCATTGGAAATTAAGAATTAAACCCGAAAAGACATTAAAATTGTAGAATACAGCacaacaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtcttgcaaaataaattgtagCATTGCAAACACTCAGTGGAATGGGAATAAAGAaagggtgggggtggggggtggtgTCAGAAGTGGAGGTTTATAAGAGATTGTTTGTAATTACATGTTCAATGTTTAATAAATCTTTGCCAATcctatatacatacacacaaaTAAGAAAAGTATATTAGAGCTATTATCCTTAACatataacaaataaaataataaaaataacaaattacagcaataatttgttgaaaattattaaaattatgttATCTGAAACTATACAATAGACATTCagtcccgaatttgcttcaatgcccacaaaacaatggctccaaatTGAGACTGGTAATGAGATCataatgcat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474 all species →	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052244 all species →	Family	High-affinity choline transporter	Interproscan
IPR001734 all species →	Family	Sodium/solute symporter	Interproscan
IPR038377 all species →	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45897 all species →	HIGH-AFFINITY CHOLINE TRANSPORTER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005307 all species →	Molecular Function	choline:sodium symporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008292 all species →	Biological Process	acetylcholine biosynthetic process	Interproscan
GO:0015871 all species →	Biological Process	choline transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14387	SLC5A7, CHT1; solute carrier family 5 (high affinity choline transporter), member 7	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.